View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_17 (Length: 325)
Name: NF8369_low_17
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 43475895 - 43475604
Alignment:
| Q |
19 |
tctgcaacagtatatatgcagactttaccgtgtacccaaccatagaatcgtgtctccaaagtccaaacccatttgttcgaaaaatctgcactctacaata |
118 |
Q |
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| T |
43475895 |
tctgcaacagtatatatgcagactttaccgtgtacccaaccatagaatcgtgtctccaaagtccaaacccatttgtccgaaaaatctgcactctacaata |
43475796 |
T |
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| Q |
119 |
aaaacctctagctcaagaaattgatccctctcccatgagaacaaaggtcatctccattctcagctccactccaatctgccacctgttcgcgctactactt |
218 |
Q |
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| T |
43475795 |
aaaacctctagctcaagaaattgatccctc-cccatgagaacaaaggccatctccattctcagctccactcccatctcccacctgttcgcgctactactt |
43475697 |
T |
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| Q |
219 |
ccgacacagttccagatctgtttcttgcaacagaaaaatgtcttaggaacgtctcctgcaatatggaacttccagccatctttgagaccaaag |
311 |
Q |
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| T |
43475696 |
ccgacacagttccagatctgtttcttgcaacagaaaaatgtcttaggaacgtctcttgcaatatggaacttccagccatctttgagaccaaag |
43475604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 43564398 - 43564610
Alignment:
| Q |
19 |
tctgcaacagtatatatgcagactttaccgtgtacccaaccatagaatcgtgtctccaaagtccaaacccatttgttcgaaaaatctgcactc------- |
111 |
Q |
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| T |
43564398 |
tctgcaacagtatatatgcagactttaccgtgtacccagccacggagtcatgtctctaaa-------cccatttgtccgaaaaatctgcactcacagtga |
43564490 |
T |
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| Q |
112 |
----tacaataaaaacctctagctcaagaaattgatccctctcccatgagaacaaaggtcatctccattctcagctccactccaatctgccacctgttcg |
207 |
Q |
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| T |
43564491 |
tccctgcaataacagcctctagttcaagcaattgatccctctcccacgataacaaaggccatctctagtctcagctccactccaatctgccacctgtgtg |
43564590 |
T |
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| Q |
208 |
cgctactacttccgacacag |
227 |
Q |
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| T |
43564591 |
cactcctacttcggacacag |
43564610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 16116518 - 16116609
Alignment:
| Q |
170 |
ctccattctcagctccactccaatctgccacctgttcgcgctactacttccgacacagttccagatctgtttcttgcaacagaaaaatgtct |
261 |
Q |
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| T |
16116518 |
ctccagtctcagctccactccaatctgccacctgcgtgcactcctacttcagacacagttgcagacctgtttctcgaaacagaaaaaagtct |
16116609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 8944190 - 8944108
Alignment:
| Q |
213 |
ctacttccgacacagttccagatctgtttcttgcaacagaaaaatgtcttaggaacgtctcctgcaatatggaacttccagcc |
295 |
Q |
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| T |
8944190 |
ctacttccgatacagtttcggacctgtttcttgcaatagaaataagccttgggaacttctcatgcaatattaaacttccagcc |
8944108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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