View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_24 (Length: 285)
Name: NF8369_low_24
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 271
Target Start/End: Original strand, 50602314 - 50602561
Alignment:
| Q |
24 |
aacctttcaatgaggtcatcaactgattcatctactagttgtttgagattcattagatcaactgtcataacttctaataaaacttgtcatggaaacaagt |
123 |
Q |
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| T |
50602314 |
aacctttcaacgaggtcatcaactgattcatctactagttgtttgagattcattagatcaactgtcataacttctaataaaacttgtcatggaaacaagt |
50602413 |
T |
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| Q |
124 |
ttacatgtcttcccatgcttggattgagtttggtgggagggaaaagtaccaccagaattttgttcatatcaacaataaagggaacaaatgtaactgttgg |
223 |
Q |
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| T |
50602414 |
ttacatgtcttcccatgcttggattgagtttggtgggagggaaaagtaccaccagaattttgttcatatcaacaataaagggaacaaatgtaactgttgg |
50602513 |
T |
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| Q |
224 |
aatcattctagttcctctcaccgcactgcacaataaatcttctgatgt |
271 |
Q |
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| T |
50602514 |
aatcattctagttcctctcaccgcactggacaataaatcttctgatgt |
50602561 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 23286342 - 23286282
Alignment:
| Q |
38 |
gtcatcaactgattcatctactagttgtttgagattcattagatcaactgtcataacttct |
98 |
Q |
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| T |
23286342 |
gtcatcaactgattcatctacttgttgtttgacattcatcagatcagatgtcattacttct |
23286282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 15918930 - 15919027
Alignment:
| Q |
110 |
tcatggaaacaagtttacatgtcttcccatgcttggattgagtttggtgggagggaaaagtaccaccagaattttgttcatatcaacaataaagggaa |
207 |
Q |
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| T |
15918930 |
tcatggaaacactttttcatgtttacctatgtttggactgagtttggtgaaaggggagagtaccacaagaaggttgttcatgttaacaataaagggaa |
15919027 |
T |
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