View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_26 (Length: 251)
Name: NF8369_low_26
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 15311197 - 15311031
Alignment:
| Q |
3 |
ggcataacttaatggtttttgtttggcctaactgtctttgtgtatattcagttattcctttggcagagcttgtgctattgggattgcttatttcttgtgg |
102 |
Q |
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| T |
15311197 |
ggcatcacttaatggtttttgtttggcctaactgactctgtctatattcagtaattcctttggcacagcttgtgctattgggattgcttgtttcttgtgg |
15311098 |
T |
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| Q |
103 |
ttatatattccatttttgattgttc-gnnnnnnnnttcaatacttcacttaatggagttgtgttgga |
168 |
Q |
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| T |
15311097 |
ttatatattctattttttattgttcaaaaaaaagattcaatacttcacttaatggtgttgtgttgga |
15311031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 15316491 - 15316325
Alignment:
| Q |
3 |
ggcataacttaatggtttttgtttggcctaactgtctttgtgtatattcagttattcctttggcagagcttgtgctattgggattgcttatttcttgtgg |
102 |
Q |
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| T |
15316491 |
ggcatcacttaatggtttttgtttggcctaactgactctgtctatattcagtaattcctttggcacagcttgtgctattgggattgcttgtttcttgtgg |
15316392 |
T |
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| Q |
103 |
ttatatattccatttttgattgttc-gnnnnnnnnttcaatacttcacttaatggagttgtgttgga |
168 |
Q |
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| T |
15316391 |
ttatatattctattttttattgttcaaaaaaaagattcaatacttcacttaatggtgttgtgttgga |
15316325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 15310984 - 15310903
Alignment:
| Q |
162 |
tgttggacaatgtggcttttgatgttaaatcgtctatataaattaagatcgttcnnnnnnnngtttcgcactatttcttctc |
243 |
Q |
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| T |
15310984 |
tgtttgacaatgtggcttttgatgttaaatcgtctatataaattaagatcgttcttttttttgtttcgcactatttcttctc |
15310903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 15316278 - 15316197
Alignment:
| Q |
162 |
tgttggacaatgtggcttttgatgttaaatcgtctatataaattaagatcgttcnnnnnnnngtttcgcactatttcttctc |
243 |
Q |
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| T |
15316278 |
tgtttgacaatgtggcttttgatgttaaatcgtctatataaattaagatcgttcttttttttgtttcgcactatttcttctc |
15316197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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