View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8369_low_28 (Length: 242)

Name: NF8369_low_28
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8369_low_28
NF8369_low_28
[»] chr3 (11 HSPs)
chr3 (3-225)||(989702-989924)
chr3 (148-225)||(998025-998102)
chr3 (148-225)||(1014415-1014492)
chr3 (20-188)||(1940141-1940310)
chr3 (8-186)||(1022779-1022959)
chr3 (8-114)||(1007751-1007858)
chr3 (5-94)||(997881-997971)
chr3 (5-94)||(1014271-1014361)
chr3 (20-83)||(1027799-1027863)
chr3 (60-114)||(969023-969077)
chr3 (148-192)||(1936579-1936623)
[»] chr4 (2 HSPs)
chr4 (3-83)||(22671808-22671889)
chr4 (161-225)||(22671715-22671779)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 989702 - 989924
Alignment:
Q  3 agatttaactagaacccatatgttaatttatgtctatgatattcattttgtatttgcctgattattggttacttcatgaatcattgttaatcaatggccg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  989702 agatttaactagaacccatatgttaatttatgtctatgatattcattttgtatttgcctgattattggttacttcatgaatcattgttaatcaatggcgg 989801  T
Q  103 tttgaatctgcaactggagaatttgcagttatatttatatgcttctttgtttgatgtttttgttctctcatcatgaatttcattttatatagatcacaat 202  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989802 tttgaatctgcaactggagaatttgcagttatatttaaatacttctttgtttgatgtttttgttctctcatcatgaatttcattttatatagatcacaat 989901  T
Q  203 cacgagttcctttagattgtttg 225  Q
    |||||||||||||||||||||||    
T  989902 cacgagttcctttagattgtttg 989924  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 998025 - 998102
Alignment:
Q  148 tttgtttgatgtttttgttctctcatcatgaatttcattttatatagatcacaatcacgagttcctttagattgtttg 225  Q
    |||||| |||||||||||||||||| ||||||||| | ||||||||| ||||||||| |  |||||||||||||||||    
T  998025 tttgttagatgtttttgttctctcaacatgaatttaagtttatatagttcacaatcatgcattcctttagattgtttg 998102  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 1014415 - 1014492
Alignment:
Q  148 tttgtttgatgtttttgttctctcatcatgaatttcattttatatagatcacaatcacgagttcctttagattgtttg 225  Q
    |||||| |||||||||||||||||| ||||||||| | ||||||||| ||||||||| |  |||||||||||||||||    
T  1014415 tttgttagatgtttttgttctctcaacatgaatttaagtttatatagttcacaatcatgcattcctttagattgtttg 1014492  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 1940310 - 1940141
Alignment:
Q  20 atatgttaatttatgtctatgatattcattttgtatttgc-ctgattattggttacttcatgaatcattgttaatcaatggccgtttgaatctgcaactg 118  Q
    |||||||||||| ||| |||| ||||  |||| ||||||  ||||||||||||||||||||| |||||||| ||  |||| || ||||||| || | ||     
T  1940310 atatgttaatttctgtttatggtatttgttttttatttgttctgattattggttacttcatggatcattgtcaagtaatgtccatttgaatatgtagctt 1940211  T
Q  119 gagaatttgcagttatatttatatgcttctttgtttgatgtttttgttctctcatcatgaatttcatttt 188  Q
    ||||| ||| |||||| ||||  |  || ||||||||| || |||||||||| |||||| ||||||||||    
T  1940210 gagaaattgtagttatttttacttatttgtttgtttgaggtctttgttctcttatcatgcatttcatttt 1940141  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 1022779 - 1022959
Alignment:
Q  8 taactagaacccatatgttaatttatgtctatgatattcattttgtatttgc-ctgattattggttacttcatgaatcattgttaatcaatggccgtttg 106  Q
    ||||| ||||| ||||||||||||| || ||||||||| |||||| | |||  |||||||||| |||||||||||||||||| ||  |||||| | ||||    
T  1022779 taactggaacctatatgttaatttacgtttatgatatttattttgaacttgttctgattattgattacttcatgaatcattgatatccaatggtcatttg 1022878  T
Q  107 aatctgcaactggagaatttgcagttatatttatatgcttctttgtt-tgatgtttttgttctctcatcatgaatttcatt 186  Q
    ||| |||| |   |||| ||||||| |  || || |  |||||||||   || ||||||||||||||||||||| ||||||    
T  1022879 aatttgcagcgtaagaaattgcagtaagtttcatttatttctttgttaatatatttttgttctctcatcatgaagttcatt 1022959  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 1007751 - 1007858
Alignment:
Q  8 taactagaacccatatgttaatttatgtctatgatattcattttgtatttgc-ctgattattggttacttcatgaatcattgttaatcaatggccgtttg 106  Q
    ||||| ||||| ||||||||||||| || ||||||||| |||||| | |||  |||||||||| |||||||||||||||||| ||  |||||| | ||||    
T  1007751 taactggaacctatatgttaatttacgtttatgatatttattttgaacttgttctgattattgattacttcatgaatcattgatatccaatggtcatttg 1007850  T
Q  107 aatctgca 114  Q
    ||| ||||    
T  1007851 aatttgca 1007858  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 997881 - 997971
Alignment:
Q  5 atttaactagaacccatatgttaatttatgtctatgatattcattttgtatttgcct-gattattggttacttcatgaatcattgttaatc 94  Q
    ||||||||||| || |||||||||||||||| ||||||||| |||||||| |||  | |||||||||||| ||| ||| || |||||||||    
T  997881 atttaactagagcctatatgttaatttatgtttatgatatttattttgtacttgtatggattattggttatttcctgagtccttgttaatc 997971  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 1014271 - 1014361
Alignment:
Q  5 atttaactagaacccatatgttaatttatgtctatgatattcattttgtatttgcct-gattattggttacttcatgaatcattgttaatc 94  Q
    ||||||||||| || |||||||||||||||| ||||||||| |||||||| |||  | |||||||||||| ||| ||| || |||||||||    
T  1014271 atttaactagagcctatatgttaatttatgtatatgatatttattttgtacttgtatggattattggttatttcctgagtccttgttaatc 1014361  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 1027799 - 1027863
Alignment:
Q  20 atatgttaatttatgtctatgatattcattttgtatttg-cctgattattggttacttcatgaat 83  Q
    |||||||||||||||| ||||||||| |||||||| |||  || |||||||||||||||||||||    
T  1027799 atatgttaatttatgtttatgatatttattttgtacttgttctcattattggttacttcatgaat 1027863  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 969023 - 969077
Alignment:
Q  60 ctgattattggttacttcatgaatcattgttaatcaatggccgtttgaatctgca 114  Q
    |||||||||||||||||| || || ||||||||| ||||| | ||||||||||||    
T  969023 ctgattattggttacttcctggataattgttaatgaatggtcatttgaatctgca 969077  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 1936623 - 1936579
Alignment:
Q  148 tttgtttgatgtttttgttctctcatcatgaatttcattttatat 192  Q
    |||||| || |||||||||||||||||| | ||||||||||||||    
T  1936623 tttgttagaggtttttgttctctcatcaagcatttcattttatat 1936579  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 22671889 - 22671808
Alignment:
Q  3 agatttaactagaacccatatgttaatttatgtctatgatattcattttgtatttg-cctgattattggttacttcatgaat 83  Q
    |||| |||| |||||| |||||||||||||||| ||||||||| |||||||| |||  || |||||||||||||||||||||    
T  22671889 agatctaaccagaacctatatgttaatttatgtttatgatatttattttgtaattgttctcattattggttacttcatgaat 22671808  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 22671779 - 22671715
Alignment:
Q  161 tttgttctctcatcatgaatttcattttatatagatcacaatcacgagttcctttagattgtttg 225  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |  ||||| |||| ||||||    
T  22671779 tttgttctctcatcatgaatttgattttatataggtcacaatcatgcattcctctagactgtttg 22671715  T

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