View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_31 (Length: 227)
Name: NF8369_low_31
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 40514878 - 40514665
Alignment:
| Q |
1 |
tttagaatcatatatggaagaatataaaacattgtaaactctgtgtgaaaatagtctcctagatttttatatttttcaaattaaattgttagtgaaataa |
100 |
Q |
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| T |
40514878 |
tttagaatcatatatggaagaatataaaacattgtaaactctgtgagaaaatagtctcctagatttttatatttttcaaattaaattgttagtgaaataa |
40514779 |
T |
|
| Q |
101 |
agtagtctgtctttcaaataatgtaaaaaataaaataagattaaataacgacaaacattaggatacattttagttaggtatgaataagcgtgtatcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40514778 |
agtagtctgtctttcaaataatgtaaaaaataaaataagattaaataacgacaaacattaggatacattttagttaggtatgaataagcgtgtatcaata |
40514679 |
T |
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| Q |
201 |
aatcatatgtccaa |
214 |
Q |
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|||||||||||||| |
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| T |
40514678 |
aatcatatgtccaa |
40514665 |
T |
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