View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8369_low_32 (Length: 213)
Name: NF8369_low_32
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 38894874 - 38895059
Alignment:
| Q |
12 |
ttggtgttattaaaagacttgcacggaactatatgaatataattatcaaagaatcaatattcatcagtttttatttccttgtgtgaatactaacaaagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38894874 |
ttggtgttattaaaagacttgcacggaactatatgaatataattatcaaagaatcaatattcatcagtttttatttccttgtgtgaatactaacaaagaa |
38894973 |
T |
|
| Q |
112 |
tagaatgctgaagttagacagacgcaaaatgtttgaccctcttttaatattagctgtggttgcagtctgtttacagcagatgcttt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
38894974 |
tagaatgctgaagttagacagacgcaaaatgtttgaccctcttttaatattagctgtggttgcaatatgtttacagcagatgcttt |
38895059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 1278687 - 1278766
Alignment:
| Q |
118 |
gctgaagttagacagacgcaaaatgtttgaccctcttt-taatattagctgtggttgcagtctgtttacagcagatgctt |
196 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
1278687 |
gctgaagttggacagacgcaaaatgtttgacccttataataatattagttgtggttgcagtctgtttacaccagatgctt |
1278766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University