View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_33 (Length: 210)
Name: NF8369_low_33
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_33 |
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| [»] scaffold0793 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 731160 - 731329
Alignment:
| Q |
24 |
ataaaaagtagataaaaataccaaaaatgtagagagacaagtgtgaagagaataataaagtcattnnnnnnnnngtagaatgtactagttgtcagattag |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
731160 |
ataaaaagtagataaaaataccaaaaatgtagagagacaagtgtgaagagaataataaagtcattaaaaaaaaagtagaatgtactggttgtcagattag |
731259 |
T |
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| Q |
124 |
tcgatccttaaactggatactaaaaaataaattagtcgttggattaatctaatgaccgatagaataatct |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
731260 |
tcgatccttaaactggatactaaaaaataaattagtcgttggattaatctaatgaccgatagaataatct |
731329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 705496 - 705326
Alignment:
| Q |
24 |
ataaaaagtagataaaaataccaaaaatgtagagagacaagtgtgaagagaataataaagtcattnnnnnnnnn-gtagaatgtactagttgtcagatta |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
705496 |
ataaaaagtagataaaaataccaaaaatgtagagagacaagtgtgaagagaataataaagtcattaaaaaaaaaagtagaatgtactagttgtcagatta |
705397 |
T |
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| Q |
123 |
gtcgatccttaaactggatactaaaaaataaattagtcgttggattaatctaatgaccgatagaataatct |
193 |
Q |
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| T |
705396 |
gtcgatccttagactggatactaaaaaataaattagtcgttggattaatctaatgaccgatagaataatct |
705326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 694474 - 694410
Alignment:
| Q |
24 |
ataaaaagtagataaaaataccaaaaatgtagagagacaagtgtgaagagaataataaagtcatt |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
694474 |
ataaaaagtagataaaaataccaaaaatgtagagagacaagtgtgaagagaataataaagtcatt |
694410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 2811 - 2642
Alignment:
| Q |
24 |
ataaaaagtagataaaaataccaaaaatgtagagagacaagtgtgaagagaataataaagtcattnnnnnnnnngtagaatgtactagttgtcagattag |
123 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2811 |
ataaaaagtagataaaaataccaaaaatgtagagaggcaagtgtgaagagaataataaagtcattaaaaaaaaagtagaatgtactagttgtcagattag |
2712 |
T |
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| Q |
124 |
tcgatccttaaactggatactaaaaaataaattagtcgttggattaatctaatgaccgatagaataatct |
193 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2711 |
tcgatccttagactggatactaaaaaataaattagtcgttggattaatctaatgaccgatagaataatct |
2642 |
T |
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