View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8369_low_4 (Length: 774)
Name: NF8369_low_4
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 1 - 757
Target Start/End: Complemental strand, 41265902 - 41265157
Alignment:
| Q |
1 |
cacaaaattggagatgataaaataaaaagatacaaatatttatatcgtttgatcaatgtggcttataaacaataaaagagactaatatcttttggaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265902 |
cacaaaattggagatgataaaataaaaagatacaaatatttatatcgtttgatcaatgtggcttataaacaataaaagagactaatatcttttggaagaa |
41265803 |
T |
|
| Q |
101 |
gaaatatagaaagagttcataatcaccccgcattttataaactcaaatatgcaaataattagatctgaggatgattatcagagaatttggataaacaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41265802 |
gaaatatagaaagagttcataatcaccccgcattttataaactcaaatatgcaaataattagatctgaggatgattatcagagaatttggataaacaa-a |
41265704 |
T |
|
| Q |
201 |
aaaaatgaacagattaaagaagtttgagctaggacataattttgaacacaactcttgtctgtatagtaaaaggttccaacctctttgaaatannnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41265703 |
aaaaatgaacagattaaagaagtttgagctaggacataattttgaacacaactcttgtctgcatagtaaaaggttccaacctctttgaaatatatttttt |
41265604 |
T |
|
| Q |
301 |
ggtgttcggggttcgaacatcaaaccatacatatattatgtattgtccctgcaatttaatcttgtgtatcggtgatcaatgaataatacaaaacataaag |
400 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265603 |
ggtgttcggggttcaaacat----------atatattatgtattgtccctgcaatttaatcttgtgtatcggtgatcaatgaataatacaaaacataaag |
41265514 |
T |
|
| Q |
401 |
taaaaaatgtttggggtgtcaaagtacatgcacttaattaaggcatggttccccgaaaacataccacaaaatcacatgagacaagaggcttttattgagg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265513 |
taaaaaatgtttggggtgtcaaagtacatgcacttaattaaggcatggttccccgaaaacataccacaaaatcacatgagacaagaggcttttattgagg |
41265414 |
T |
|
| Q |
501 |
ttcctgcaagtaacaaccaaaacacgaccgtttatccacctcatataaagtgaattacaattattgatgaataagttaatgataatatttataaattatg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41265413 |
ttcctgcaagtaacaaccaaaacacgaccgtttatccacctcatataaagtgaattacaattattgatgaataagttaatgataatattgataaattatg |
41265314 |
T |
|
| Q |
601 |
agtgattgaaatatgaaccattccttctaaagaactagagcccctaaggtgtctatctttggatacgatagtgtttgtttacgtatcatttcagatttaa |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265313 |
agtgattgaaatatgaaccattccttctaaagaactagagcccctaaagtgtctatctttggatacgatagtgtttgtttacgtatcatttcagatttaa |
41265214 |
T |
|
| Q |
701 |
acatatactagtataagtcaaaaataatcaatatgatgagttcaacaatctctttca |
757 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265213 |
acatatactagtataagtcaaaaataatcaatatgatgagttcaacaatctctttca |
41265157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 50676893 - 50676942
Alignment:
| Q |
301 |
ggtgttcggggttcgaacatcaaaccatacatatattatgtattgtccct |
350 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||| |||||||||||||| |
|
|
| T |
50676893 |
ggtgttcggggttcgaaccccaacccctacatataatatgtattgtccct |
50676942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 23979408 - 23979453
Alignment:
| Q |
301 |
ggtgttcggggttcgaacatcaaaccatacatatattatgtattgt |
346 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
23979408 |
ggtggtcggggtttgaaccccaaaccatacatatattatgtattgt |
23979453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University