View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_5 (Length: 678)
Name: NF8369_low_5
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 258 - 583
Target Start/End: Complemental strand, 10298811 - 10298486
Alignment:
| Q |
258 |
gtaaccggtctcccctcatacagttcagtgaagacagagagccgtagcatgtcttggaagcttatttatggtttttagctgtattctttgcaaagaagag |
357 |
Q |
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| T |
10298811 |
gtaaccggtctcccctcatacagttcagtgaagacagaa--ccgtagcatgtcttggaagcttatttatggtttttagctgtattctttgcaaagaagag |
10298714 |
T |
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| Q |
358 |
ag--tgaaaaaacttaaataaagttttatgtctctgttctagaaatggaaaagagtcgaactactgaatcattgatggaactgcatgaaagatccgtatt |
455 |
Q |
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| T |
10298713 |
agagtgaaaaaacttgaataaagttttatgcctctgttctagaaatggaaaagagtcgaactactgaatcattgatggaactgcatgaaagatccgtatt |
10298614 |
T |
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| Q |
456 |
atatattgactctgtcttatcatcccgtctcaatnnnnnnnttctttgtattgaaatgaaatactcatctctaggaaatgcacaaaatgcttttcctttt |
555 |
Q |
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| T |
10298613 |
atatattgactctgtcttatcatcccgtctcaataaaaaaattctttgtattgaaatgaaatactcatctctaggaaatgcacaaaatgcttttcctttt |
10298514 |
T |
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| Q |
556 |
tgaaagaatttaatataggtgtgaaagt |
583 |
Q |
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| T |
10298513 |
tgaaagaatttaatataggtgtgaaagt |
10298486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 10298982 - 10298848
Alignment:
| Q |
87 |
actcgaccaactaggttacggtggattggtggtccatgttagacgcagtaaaacgtcaaaatctgtttaatgagaagaacaaaaatgtaccatcttgtta |
186 |
Q |
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| T |
10298982 |
actcgaccaactaggttacggtggattggtggtccatgttagacgcagtaaaacgtcaaaatctgtttaatgagaagaacaaaaatgtaccatcttgtta |
10298883 |
T |
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| Q |
187 |
gaaattgttggtggttatgtactatatgtattggc |
221 |
Q |
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| T |
10298882 |
gaaattgttggtggttatgtactatatgtattggc |
10298848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 579 - 672
Target Start/End: Complemental strand, 10298251 - 10298158
Alignment:
| Q |
579 |
aaagtggtgagcattgaatgccaaatttagactaaattcagttcttactggattttcgcgactccgaaactcatcatgatcatttccaagaata |
672 |
Q |
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| T |
10298251 |
aaagtagtgagcattgaatgccaaatttagactaaattcagttcttactggattttcgcgactccgaaactcatcatgatcatttccaagaata |
10298158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 10299043 - 10299013
Alignment:
| Q |
36 |
atggatgagtttgagtggaaaggagaaagcc |
66 |
Q |
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| T |
10299043 |
atggatgagtttgagtggaaaggagaaagcc |
10299013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 618 - 670
Target Start/End: Original strand, 43789923 - 43789975
Alignment:
| Q |
618 |
agttcttactggattttcgcgactccgaaactcatcatgatcatttccaagaa |
670 |
Q |
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| T |
43789923 |
agttcttactggattttcacggctgcgaaactcattatgatcatttccaagaa |
43789975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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