View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_6 (Length: 472)
Name: NF8369_low_6
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_6 |
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| [»] scaffold0164 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 43558390 - 43558058
Alignment:
| Q |
7 |
tggacatcatgtcattggaacagttagagatttaggtaaaatgtattttatgatcatgaccaaatgtattttcacttttcacatttaacatatacttgca |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43558390 |
tggatatcatgtcattggaacagttagagatttaggtaaaatgtattttatgatcatgaccaaatgtattttcacttttcacatttaacatatacttgca |
43558291 |
T |
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| Q |
107 |
ggtaagaagcagaaagttgaacatttatggaagttggaaggagcaacagaaagactcaaactagtccaagctgatttaatggaagaaaatagcttcgaca |
206 |
Q |
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| T |
43558290 |
ggtaagaagcagaaagttgaacatttatggaagttggaaggagcaacagaaagactcaaactagtccaagctgatttaatggaagaaaatagcttcgaca |
43558191 |
T |
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| Q |
207 |
atgcgatcatgggatgcaaaggtgtctttcacattgcctctccagtactcaatcatatatcaaatgatcctaaggtttgatatttcatttatatta---- |
302 |
Q |
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| T |
43558190 |
atgcgatcatgggatgcaaaggtgtctttcacattgcctctccagtactcaatcatatatcaaatgatcctaaggtttgatatttcatttatattaatta |
43558091 |
T |
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| Q |
303 |
attattcataggtatctctatgtcacaacctat |
335 |
Q |
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| T |
43558090 |
attattcatagatatctctatgtcacaacctat |
43558058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 43558045 - 43557977
Alignment:
| Q |
401 |
ataatctcaaacaacaggcagaaatcttggaaccagcggtccaaggtacgctgaatgttttgcgttctt |
469 |
Q |
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| T |
43558045 |
ataatctcaaacaacaggcagaaatcttggaaccagcagtccaaggtacgctgaatgttttgcgttctt |
43557977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 96 - 399
Target Start/End: Complemental strand, 23751 - 23458
Alignment:
| Q |
96 |
atatacttgcaggtaagaagcagaaagttgaacatttatggaagttggaaggagcaacagaaagactcaaactagtccaagctgatttaatggaagaaaa |
195 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
23751 |
atatacttgcaggtaagaagcataaagttgaacatttatggaagttggagggaccaacagaaagactcgaactagtccaagctgatttaatggaacaaaa |
23652 |
T |
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| Q |
196 |
tagcttcgacaatgcgatcatgggatgcaaaggtgtctttcacattgcctctccagtactcaatcatatatcaaatgatcctaaggtttgatatttcatt |
295 |
Q |
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| T |
23651 |
tagcttcgacaaagcgatcatgggatgcaaagctgtctttcacattgcctctccagtacccaatcatatatcaaatggtcctaaggtgtgatatttcatt |
23552 |
T |
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| Q |
296 |
tatattaattattcataggtatctctatgtcacaacctataagcttgcttatacattaatcaaaatcttcacatcatggagactatacacatagtgaaat |
395 |
Q |
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| T |
23551 |
tatatta----ttcataggtatctctatgtcacaacctataagctc----atgcattaattaaaatcctcacatcatggagactat--acatagtgaaat |
23462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 469
Target Start/End: Complemental strand, 23407 - 23352
Alignment:
| Q |
414 |
acaggcagaaatcttggaaccagcggtccaaggtacgctgaatgttttgcgttctt |
469 |
Q |
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| T |
23407 |
acaggcagaaatcttggaaccagcggtccaaggtacgctaaatgtgttgcgttctt |
23352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 23850 - 23807
Alignment:
| Q |
7 |
tggacatcatgtcattggaacagttagagatttaggtaaaatgt |
50 |
Q |
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| T |
23850 |
tggatatcatgtcattggaacaattagacatttaggtaaaatgt |
23807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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