View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_9 (Length: 453)
Name: NF8369_low_9
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 9590441 - 9590008
Alignment:
| Q |
18 |
agaacaagaaaaacataaacatgagcacttcggggagaactagacctcaaaaagcttcgggctactacttttattgcttgccttccaaaagccatacggt |
117 |
Q |
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| T |
9590441 |
agaacaagaaaagcataaacatgagcacttcagggagaactagacctcaaaaagcttcagggtactacttttattgcttgccttccaaaagccatacggt |
9590342 |
T |
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| Q |
118 |
atctactgtgtataggagtccatgacctgctaatcagaccaattcttatctaaaatcattttgtcttaacctttataaacacaagaatcacagcttcatt |
217 |
Q |
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| T |
9590341 |
atctactgtgtataggagtccatgacctgccaatcagaccaattcttatctaaaatcattttgtcttaacctttataaacacaagaatcacagcttcatt |
9590242 |
T |
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| Q |
218 |
ctcaatctgttcagaaatatagttcagattagacataaattctctctacattatttttgtcaccttttctcatactctccgattactaactttaatagtt |
317 |
Q |
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| T |
9590241 |
ctcaatctgttcagaaatatagttcagattagacataaattctctctacattatttttgtcaccttttctcatactctccgattactaactttaatagtt |
9590142 |
T |
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| Q |
318 |
agaaagatgtttgttattgcatgtttcctgtctatatttttgcattatgctagaatagtctatgtggatttcttctggaatttgtgtacagaagtaatct |
417 |
Q |
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| T |
9590141 |
agaaagatgtttgttattgcatgtttcctgtctatatttttgcattatgctagaatagtc--tgtggatttcttctggaatttgtgtacagaagtaatct |
9590044 |
T |
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| Q |
418 |
gtgccaattaaccattgtctaactctttctgcagtt |
453 |
Q |
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| T |
9590043 |
gtgccaattaaccattgtctaactctctctgcagtt |
9590008 |
T |
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