View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8370_high_12 (Length: 267)

Name: NF8370_high_12
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8370_high_12
NF8370_high_12
[»] chr7 (11 HSPs)
chr7 (1-252)||(4631377-4631628)
chr7 (3-252)||(4667391-4667634)
chr7 (116-178)||(4637378-4637440)
chr7 (116-178)||(4711584-4711646)
chr7 (116-178)||(4864446-4864508)
chr7 (114-191)||(4654004-4654081)
chr7 (116-180)||(4696702-4696766)
chr7 (117-180)||(4644214-4644277)
chr7 (122-191)||(4783353-4783422)
chr7 (122-191)||(4815782-4815851)
chr7 (114-178)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (3-252)||(18925144-18925387)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 4631628 - 4631377
Alignment:
Q  1 attcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631628 attcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttc 4631529  T
Q  101 aaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631528 aaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaa 4631429  T
Q  201 ttaaatggtttagctttcatcaacggaattgagattgtgtctatgccttctt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631428 ttaaatggtttagctttcatcaacggaattgagattgtgtctatgccttctt 4631377  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 4667634 - 4667391
Alignment:
Q  3 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 102  Q
    ||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  || || ||||||||| |||    
T  4667634 tcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttagcccttcactttggcttccaa 4667535  T
Q  103 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 202  Q
    |||||| ||||||||||||||||||||||||||| || |     | |   ||||| ||| || ||||||||||||||||      |||||||||||||||    
T  4667534 acgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaactttcattcccaa------aaacacaaaccaatt 4667441  T
Q  203 aaatggtttagctttcatcaacggaattgagattgtgtctatgccttctt 252  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  4667440 aaatgcttttgctttcatcaacggaattgagattgtgtctatgccgtctt 4667391  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  116 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 178  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 4711584 - 4711646
Alignment:
Q  116 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 178  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 4711646  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  116 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 178  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 4654081 - 4654004
Alignment:
Q  114 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 191  Q
    ||||||||||||||||||||||| ||| |    || ||| |||||||||||||||||||||||||||| || ||||||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaac 4654004  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 4696702 - 4696766
Alignment:
Q  116 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 180  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||    
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattccca 4696766  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  117 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 180  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 4783353 - 4783422
Alignment:
Q  122 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 191  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4783422  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 4815782 - 4815851
Alignment:
Q  122 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 191  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4815851  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  114 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 178  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 252
Target Start/End: Original strand, 18925144 - 18925387
Alignment:
Q  3 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 102  Q
    ||||||||| || ||||||||| | ||||||||||||| |||||||| ||||||||  | ||||||||||| |||||||| ||| | |||||||||  ||    
T  18925144 tcgtatcaaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgtcacccttctcaatgactttaaccccgcactttggcttcaaa 18925243  T
Q  103 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 202  Q
    |||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| |||| ||||||||||||||   ||| ||   || ||| |||      
T  18925244 acgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagttaaatataactttcattcc---aaacac---cataaatcaacc 18925337  T
Q  203 aaatggtttagctttcatcaacggaattgagattgtgtctatgccttctt 252  Q
    ||| | ||  ||||||||||||||||||||||| ||||| ||||||||||    
T  18925338 aaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttctt 18925387  T

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