View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8370_high_16 (Length: 228)

Name: NF8370_high_16
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8370_high_16
NF8370_high_16
[»] chr5 (4 HSPs)
chr5 (1-212)||(31473105-31473315)
chr5 (1-46)||(1190109-1190154)
chr5 (1-48)||(16092699-16092746)
chr5 (1-46)||(36208298-36208343)
[»] chr7 (5 HSPs)
chr7 (1-48)||(20137623-20137670)
chr7 (1-46)||(4296410-4296455)
chr7 (2-46)||(24817865-24817909)
chr7 (1-48)||(9680540-9680586)
chr7 (1-46)||(11355010-11355054)
[»] chr6 (4 HSPs)
chr6 (1-48)||(3396093-3396140)
chr6 (2-46)||(15719423-15719467)
chr6 (8-46)||(3390132-3390170)
chr6 (1-47)||(32447830-32447876)
[»] chr2 (5 HSPs)
chr2 (1-48)||(38414522-38414569)
chr2 (1-47)||(45239455-45239501)
chr2 (2-45)||(17848812-17848855)
chr2 (1-48)||(31733239-31733286)
chr2 (1-46)||(28196334-28196379)
[»] chr3 (8 HSPs)
chr3 (1-47)||(3314403-3314449)
chr3 (1-46)||(6231169-6231214)
chr3 (1-47)||(47149412-47149458)
chr3 (5-46)||(3306518-3306559)
chr3 (1-49)||(53590908-53590956)
chr3 (1-48)||(890263-890310)
chr3 (4-46)||(54692069-54692111)
chr3 (9-46)||(25633231-25633268)
[»] chr8 (3 HSPs)
chr8 (1-46)||(30481051-30481096)
chr8 (1-47)||(40878048-40878093)
chr8 (1-46)||(35872868-35872913)
[»] chr4 (7 HSPs)
chr4 (1-46)||(19095696-19095741)
chr4 (1-48)||(12396360-12396407)
chr4 (1-48)||(12401302-12401349)
chr4 (4-47)||(33415977-33416020)
chr4 (8-46)||(37313562-37313600)
chr4 (9-46)||(18537992-18538029)
chr4 (1-46)||(24447069-24447114)
[»] chr1 (7 HSPs)
chr1 (5-46)||(12302991-12303032)
chr1 (1-48)||(40133656-40133703)
chr1 (1-47)||(17318611-17318657)
chr1 (1-46)||(50079338-50079383)
chr1 (1-48)||(50077148-50077195)
chr1 (1-48)||(50308033-50308079)
chr1 (8-48)||(31423397-31423437)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-46)||(79661-79705)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31473105 - 31473315
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaatagataacaacacattacattgacattatttcatacttccataacctaacgag 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||    
T  31473105 cttcagcaaacttcaatttctccaattttaaatcactttcacaacaatagataacaacacattacattgatattatttcatacttcc-taaccaaaccag 31473203  T
Q  101 actgaaattcaacataaacaaggcaacaagaacttaatcactatcaaagtcaatctcctcatcgtcaatgaactgaacaaaaatattattcggaacattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31473204 actgaaattcaacataaacaaggcaacaagaacttaatcactatcaaagtcaatctcctcatcgtcaatgaactgaacaaaaatattattcggaacattt 31473303  T
Q  201 tcaattgtgaac 212  Q
    ||||||||||||    
T  31473304 tcaattgtgaac 31473315  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1190109 - 1190154
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  1190109 cttcagcaaacttcaatttctccaattttgagtcactttcacaaca 1190154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16092699 - 16092746
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  16092699 cttcagcaaacttcaatttctccaattttgagtcagtttcacaacaat 16092746  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36208343 - 36208298
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||||||  ||||||| | ||||||||||||||    
T  36208343 cttcagcaaacttcaatttcaccaattttaagtcactttcacaaca 36208298  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20137623 - 20137670
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  20137623 cttcagcaaacttcaatttctccaattttgagtcactttcacaacaat 20137670  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4296410 - 4296455
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  4296410 cttcagcaagcttcaatttctccaattttgagtcactttcacaaca 4296455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 24817865 - 24817909
Alignment:
Q  2 ttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||||    
T  24817865 ttcaacaaacttcaatttctccaattttgagtcactttcacaaca 24817909  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9680586 - 9680540
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  9680586 cttcagcaaactt-aatttctccaattttgagtcactttcacaacaat 9680540  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11355054 - 11355010
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||    
T  11355054 cttcagcaaact-caatttcttcaattttgagtcactttcacaaca 11355010  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3396140 - 3396093
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  3396140 cttcagcaaacttcaatttctccaattttgagtcactttcacaacaat 3396093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 15719467 - 15719423
Alignment:
Q  2 ttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||    
T  15719467 ttcagcaaactttaatttctccaattttgagtcactttcacaaca 15719423  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 3390170 - 3390132
Alignment:
Q  8 aaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  3390170 aaacttcaatttctccaattttgagtcactttcacaaca 3390132  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32447830 - 32447876
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaa 47  Q
    ||||| ||||||| ||||||| ||||||||| |||||||||||||||    
T  32447830 cttcaacaaacttaaatttctccaattttgagtcactttcacaacaa 32447876  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38414522 - 38414569
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  38414522 cttcagcaaacttcaatttctccaattttgagtcactttcacaacaat 38414569  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45239455 - 45239501
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaa 47  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  45239455 cttcagcaaacttcaatttctccaattttgagtcactttcacaacaa 45239501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 17848855 - 17848812
Alignment:
Q  2 ttcagcaaacttcaatttctgcaattttgaatcactttcacaac 45  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  17848855 ttcagcaaacttcaatttctccaattttgagtcactttcacaac 17848812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31733239 - 31733286
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  31733239 cttcaccaaacttcaatttctccaattttgagtcactttcacaacaat 31733286  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28196379 - 28196334
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||    
T  28196379 cttcagcaaacttcaatttctccatttttgagtcactttcacaaca 28196334  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3314449 - 3314403
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaa 47  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  3314449 cttcaacaaacttcaatttcttcaattttgaatcactttcacaacaa 3314403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6231214 - 6231169
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  6231214 cttcagcaaacttcaatttctccaattttgagtcactttcacaaca 6231169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47149412 - 47149458
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaa 47  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||    
T  47149412 cttcatcaaacttcaatttctccaattttgagtcactttcacaacaa 47149458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 3306559 - 3306518
Alignment:
Q  5 agcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  3306559 agcaaacttcaatttctccaattttgagtcactttcacaaca 3306518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 53590956 - 53590908
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaata 49  Q
    ||||||||||||||||||||| ||||||||| | | |||||||||||||    
T  53590956 cttcagcaaacttcaatttcttcaattttgagttattttcacaacaata 53590908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 890263 - 890310
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||| ||||||||||||||| ||||||||| ||||||||| ||||||    
T  890263 cttcaacaaacttcaatttctccaattttgagtcactttcataacaat 890310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 54692069 - 54692111
Alignment:
Q  4 cagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    |||||||||||||||||| ||||||| | ||||||||||||||    
T  54692069 cagcaaacttcaatttctccaattttaagtcactttcacaaca 54692111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 25633268 - 25633231
Alignment:
Q  9 aacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  25633268 aactccaatttcttcaattttgaatcactttcacaaca 25633231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30481051 - 30481096
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  30481051 cttcagcaaacttcaatttctccaattttgagtcactttcacaaca 30481096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40878048 - 40878093
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaa 47  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||    
T  40878048 cttcagcaaact-caatttctccaattttgagtcactttcacaacaa 40878093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35872868 - 35872913
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||||| | ||||||||| || |||||||||||    
T  35872868 cttcagcaaacttcaatttattcaattttgagtccctttcacaaca 35872913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19095741 - 19095696
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  19095741 cttcagcaaacttcaatttctccaattttaaatcactttcacaaca 19095696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12396360 - 12396407
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||||||||||| ||||||| ||||||||| | ||||||||||||||    
T  12396360 cttcagcaaacttgaatttctccaattttgagtaactttcacaacaat 12396407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12401302 - 12401349
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||||||||||| ||||||| ||||||||| | ||||||||||||||    
T  12401302 cttcagcaaacttgaatttctccaattttgagtaactttcacaacaat 12401349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 33415977 - 33416020
Alignment:
Q  4 cagcaaacttcaatttctgcaattttgaatcactttcacaacaa 47  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||    
T  33415977 cagcaaatttcaatttctccaattttgagtcactttcacaacaa 33416020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 37313562 - 37313600
Alignment:
Q  8 aaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  37313562 aaacttcaatttctccaattttgagtcactttcacaaca 37313600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 18537992 - 18538029
Alignment:
Q  9 aacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  18537992 aacttcaatttcttcaattttgagtcactttcacaaca 18538029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24447069 - 24447114
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||||| | ||||||||| || |||||||||||    
T  24447069 cttcagcaaacttcaatttattcaattttgagtccctttcacaaca 24447114  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 12302991 - 12303032
Alignment:
Q  5 agcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  12302991 agcaaacttcaatttctccaattttgaatcactttcacaaca 12303032  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40133703 - 40133656
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||    
T  40133703 cttcagcaaacttcaatttctctaattttgagtcactttcacaacaat 40133656  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17318657 - 17318611
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaa 47  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||    
T  17318657 cttcagcaaacttcaatttctccgattttgagtcactttcacaacaa 17318611  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50079338 - 50079383
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||    
T  50079338 cttcagcaaacttcaatttcttcaatttggagtcactttcacaaca 50079383  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50077148 - 50077195
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    ||||| |||||||||||||||  |||||||| ||||||||||||||||    
T  50077148 cttcaacaaacttcaatttctctaattttgagtcactttcacaacaat 50077195  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50308033 - 50308079
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  50308033 cttcagcaaact-caatttctccaattttgagtcactttcacaacaat 50308079  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 31423397 - 31423437
Alignment:
Q  8 aaacttcaatttctgcaattttgaatcactttcacaacaat 48  Q
    |||| ||||||||| ||||||||| ||||||||||||||||    
T  31423397 aaacctcaatttcttcaattttgagtcactttcacaacaat 31423437  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 79705 - 79661
Alignment:
Q  1 cttcagcaaacttcaatttctgcaattttgaatcactttcacaaca 46  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||    
T  79705 cttcagcaaact-caatttctccaattttgagtcactttcacaaca 79661  T

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