View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8370_high_4 (Length: 410)

Name: NF8370_high_4
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8370_high_4
NF8370_high_4
[»] chr3 (1 HSPs)
chr3 (19-410)||(47368198-47368589)


Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 47368589 - 47368198
Alignment:
Q  19 tattggttataaaagaatctaccaatctccacagactcaatagttccaaaccaataataaataccagctatccctgcaattctaaagcaaattcaaaaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47368589 tattggttataaaagaatctaccaatctccacagactcaatagttccaaaccaataataaataccagctatccctgcaattctaaagcaaattcaaaaag 47368490  T
Q  119 aagccaaaactacaactctcatactggagctaaaagatgaatatgctgattttcaagtgtcttcagatggctttgctgctagttttgtctagcagattca 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47368489 aagccaaaactacaactctcatactggagctaaaagatgaacatgctgattttcaagtgtcttcagatggctttgctgctagttttgtctagcagattca 47368390  T
Q  219 ccgtagcagaaaagaaaacacagcatcttaaaaggacatacataattcacatggacaagttcaacatgccagcaagtttcgacgatcatctccaatggta 318  Q
    || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47368389 ccatagcagaaaagaaaacacaacatcttaaaaggacatacataattcacatggacaagttcaacatgccagcaagtttcgacgatcatctccaatggta 47368290  T
Q  319 tgattcatcactaaaatcagtatcagacactgcagagacgatgtatacctacaaacatgtagctcatggcttctccacaaggctaactactc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47368289 tgattcatcactaaaatcagtatcagacactgcagagacgatgtatacctacaaacatgtagctcatggcttctccacaaggctaactactc 47368198  T

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