View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8370_low_1 (Length: 819)

Name: NF8370_low_1
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8370_low_1
NF8370_low_1
[»] chr2 (9 HSPs)
chr2 (17-633)||(43797039-43797635)
chr2 (633-807)||(43796801-43796975)
chr2 (636-698)||(12238527-12238589)
chr2 (321-419)||(43798345-43798447)
chr2 (657-698)||(17317159-17317200)
chr2 (637-676)||(32522090-32522129)
chr2 (633-676)||(40301354-40301397)
chr2 (633-696)||(42839361-42839424)
chr2 (633-674)||(32366154-32366195)
[»] scaffold0004 (1 HSPs)
scaffold0004 (633-696)||(227688-227751)
[»] chr8 (18 HSPs)
chr8 (638-697)||(9781196-9781255)
chr8 (633-697)||(28280690-28280754)
chr8 (633-699)||(1184762-1184828)
chr8 (633-696)||(2669630-2669693)
chr8 (636-697)||(34286607-34286668)
chr8 (633-697)||(31079207-31079271)
chr8 (636-698)||(28879038-28879100)
chr8 (660-698)||(35168361-35168399)
chr8 (633-673)||(2563363-2563403)
chr8 (665-697)||(14942391-14942423)
chr8 (632-696)||(35453392-35453456)
chr8 (633-692)||(402129-402188)
chr8 (637-676)||(30973991-30974030)
chr8 (633-676)||(42102109-42102152)
chr8 (633-676)||(42363357-42363400)
chr8 (665-699)||(2563323-2563357)
chr8 (661-698)||(18396916-18396953)
chr8 (669-698)||(30973955-30973984)
[»] chr3 (12 HSPs)
chr3 (637-697)||(38524069-38524129)
chr3 (636-696)||(37601071-37601131)
chr3 (636-697)||(43376678-43376737)
chr3 (658-698)||(45331361-45331401)
chr3 (637-676)||(3645305-3645344)
chr3 (637-676)||(20894505-20894544)
chr3 (637-676)||(29614196-29614235)
chr3 (669-698)||(2086782-2086811)
chr3 (633-674)||(4257342-4257383)
chr3 (669-698)||(4974277-4974306)
chr3 (641-698)||(19307817-19307874)
chr3 (633-698)||(45049415-45049480)
[»] scaffold0091 (1 HSPs)
scaffold0091 (637-704)||(2624-2691)
[»] chr4 (14 HSPs)
chr4 (635-702)||(22397348-22397415)
chr4 (636-691)||(43983426-43983481)
chr4 (636-698)||(7148752-7148814)
chr4 (637-698)||(2141621-2141682)
chr4 (636-697)||(26206398-26206459)
chr4 (642-706)||(48591474-48591538)
chr4 (638-698)||(54412093-54412153)
chr4 (633-676)||(2702756-2702799)
chr4 (637-676)||(15184549-15184588)
chr4 (648-691)||(55852998-55853041)
chr4 (636-674)||(52700588-52700626)
chr4 (633-674)||(9201655-9201696)
chr4 (657-698)||(9319170-9319211)
chr4 (636-697)||(52274164-52274225)
[»] chr1 (14 HSPs)
chr1 (633-707)||(8410120-8410194)
chr1 (636-692)||(6337800-6337856)
chr1 (636-696)||(48819281-48819341)
chr1 (633-676)||(15235201-15235244)
chr1 (633-676)||(15791386-15791429)
chr1 (641-703)||(28870199-28870261)
chr1 (633-667)||(29333428-29333462)
chr1 (635-676)||(37148136-37148177)
chr1 (635-676)||(37156961-37157002)
chr1 (633-676)||(22088452-22088495)
chr1 (633-676)||(32497312-32497355)
chr1 (633-676)||(51162271-51162314)
chr1 (657-699)||(37431145-37431187)
chr1 (633-674)||(41003391-41003432)
[»] chr6 (5 HSPs)
chr6 (633-698)||(2034270-2034335)
chr6 (637-698)||(32165305-32165366)
chr6 (667-698)||(8011135-8011166)
chr6 (633-676)||(10184370-10184413)
chr6 (636-697)||(10755324-10755385)
[»] chr5 (10 HSPs)
chr5 (636-698)||(40696981-40697043)
chr5 (643-698)||(1942990-1943045)
chr5 (633-676)||(15413994-15414037)
chr5 (633-696)||(38461323-38461386)
chr5 (636-698)||(42706776-42706838)
chr5 (633-697)||(28357333-28357397)
chr5 (637-676)||(5203478-5203517)
chr5 (633-676)||(25332279-25332322)
chr5 (633-676)||(33757090-33757133)
chr5 (636-697)||(41534604-41534665)
[»] chr7 (10 HSPs)
chr7 (636-697)||(47511024-47511085)
chr7 (633-697)||(29378626-29378690)
chr7 (633-676)||(24371447-24371490)
chr7 (636-697)||(43818923-43818982)
chr7 (637-674)||(18260890-18260927)
chr7 (627-676)||(21027548-21027597)
chr7 (636-697)||(30094775-30094836)
chr7 (636-674)||(35809094-35809132)
chr7 (633-675)||(42083458-42083500)
chr7 (639-697)||(46743931-46743989)


Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 17 - 633
Target Start/End: Complemental strand, 43797635 - 43797039
Alignment:
Q  17 atacatgccaaatgacattatatttttcctttattattttgatgaatctggccttctcctttcttgttgttcctatttttgtaaggatatcaaacaacaa 116  Q
    |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43797635 atacatgccaaatgacatt-----tttcctttattattttgatgaatctggccttctcctttcttgttgttcctatttttgtaaggatatcaaacaacaa 43797541  T
Q  117 taataattccctcctctctattctttctcagcaagcgacattaacgtttttacttcttcctttgctaatttatagacaacatgtataacttaaaaaccca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43797540 taataattccctcctctctattctttctcagcaagcgacattaacgtttttacttcttcctttgctaatttatagacaacatgtataacttaaaaaccca 43797441  T
Q  217 agaaaacaaatacgtgcatgcatgattaacaattgtctcattgaaaaccttactcaaattaaagaataccaaagataaaaagtgggacaagaaaaacgaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||||||||    
T  43797440 agaaaacaaatacgtgcatgcatgattaacaattgtctcattgaaaaccttactc-----aaagaataccaaagataaaaagttggacaagaaaaacgaa 43797346  T
Q  317 agttacaaagactaaactcataaggaatcaatgaaacatatactcaagaagaccaaaggataatcctgttaaaaacctcgatgaataatacttactctat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||    
T  43797345 agttacaaagactaaactcataaggaatcaatgaaacatatactcaagaagaccaaaggataatcctgtt----------atgaataatacttactctat 43797256  T
Q  417 ttcttaagaaatcatcacgggtaaaatttagaataaggtaaaagaagctaattacatgcacagaacataaattttaagcatctaaataaaacatcaacaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43797255 ttcttaagaaatcatcacgggtaaaatttagaataaggtaaaagaagctaattacatgcacagaacagaaattttaagcatctaaataaaacatcaacaa 43797156  T
Q  517 ctgaacaaatgtaaaaattaatatagattataatgtaataaaaagcagaaagcatgcaaataatatattgcattaccacctcggcctgtttggattgagt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43797155 ctgaacaaatgtaaaaattaatatagattataatgtaataaaaagcagaaagcatgcaaataatatattgcattaccacctgggcctgtttggattgagt 43797056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 633 - 807
Target Start/End: Complemental strand, 43796975 - 43796801
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 732  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796975 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 43796876  T
Q  733 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaccaccaa 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796875 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaccaccaa 43796801  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 636 - 698
Target Start/End: Original strand, 12238527 - 12238589
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  12238527 cttataaataatacattaatgcttatttatttgcataagctctaaaataagccaatcccaacg 12238589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 321 - 419
Target Start/End: Complemental strand, 43798447 - 43798345
Alignment:
Q  321 acaaagactaaactcataaggaa-tcaatgaaacatatactcaagaagaccaaaggataatcctg----ttaaaaacctcgatgaataatacttactcta 415  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| |||||||||    |||||| |||||||||| |||| || |||||    
T  43798447 acaaagactaaactcataaggaaatcaatgaaacatgtactcaagaagacc-aagcataatcctgttaattaaaagcctcgatgaaaaatagttgctcta 43798349  T
Q  416 tttc 419  Q
    ||||    
T  43798348 tttc 43798345  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 698
Target Start/End: Complemental strand, 17317200 - 17317159
Alignment:
Q  657 cttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  17317200 cttatttatttacataagctcaaaaataagtcaatccaaacg 17317159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 676
Target Start/End: Original strand, 32522090 - 32522129
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  32522090 ttataaataatacataaaaacttatttatttacataagct 32522129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 40301397 - 40301354
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  40301397 aaacttataaataatacataaaaacttatttatttgcataagct 40301354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 696
Target Start/End: Original strand, 42839361 - 42839424
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 696  Q
    |||||||| |||||||||| || |||||||||| ||||||||||| | ||||| |||| |||||    
T  42839361 aaacttatgaataatacataaaaacttatttatctacataagctcaataataaaccaacccaaa 42839424  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Complemental strand, 32366195 - 32366154
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataag 674  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  32366195 aaacttataaataatacataaaaacttatttatttgcataag 32366154  T

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Target: scaffold0004 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 633 - 696
Target Start/End: Complemental strand, 227751 - 227688
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 696  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  227751 aaacttataaatactacattaatgcttatttattcgcataagctctaaaataagccaatccaaa 227688  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 638 - 697
Target Start/End: Complemental strand, 9781255 - 9781196
Alignment:
Q  638 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  9781255 tataaataatacattaatgcttatttatttgcataagctctaaaataagtcaatccaaac 9781196  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 633 - 697
Target Start/End: Complemental strand, 28280754 - 28280690
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||||    
T  28280754 aaacttataaataatacataaatgcatatttatttgcataagctctaaaataagctaatccaaac 28280690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 633 - 699
Target Start/End: Complemental strand, 1184828 - 1184762
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacga 699  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||    
T  1184828 aaacttttaaatgatacattaatgcttatttatttgcataagctttaaaataagccaattcaaacga 1184762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 633 - 696
Target Start/End: Complemental strand, 2669693 - 2669630
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 696  Q
    |||||||||||||||||||||   ||||||||||| |||||||| |||||||| ||||||||||    
T  2669693 aaacttataaataatacattagagcttatttatttgcataagctataaaataaaccaatccaaa 2669630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 34286607 - 34286668
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||| |||||||||| ||  ||||||||||||||||||||| |||||||| ||||||||||    
T  34286607 cttatgaataatacataaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 697
Target Start/End: Original strand, 31079207 - 31079271
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||||| ||||||||||| ||| | ||||||||  ||||||||||||||||||| |||||||||    
T  31079207 aaacttaaaaataatacataaatgcatatttattaccataagctctaaaataagctaatccaaac 31079271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 698
Target Start/End: Complemental strand, 28879100 - 28879038
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||| ||||||    
T  28879100 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaattcaaacg 28879038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 660 - 698
Target Start/End: Complemental strand, 35168399 - 35168361
Alignment:
Q  660 atttatttacataagctctaaaataagccaatccaaacg 698  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  35168399 atttatttacataagctcaaaaataagccaatccaaacg 35168361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 633 - 673
Target Start/End: Complemental strand, 2563403 - 2563363
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataa 673  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  2563403 aaacttataaataatacattaatatttatttatttgcataa 2563363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 697
Target Start/End: Complemental strand, 14942423 - 14942391
Alignment:
Q  665 tttacataagctctaaaataagccaatccaaac 697  Q
    |||||||||||||||||||||||||||||||||    
T  14942423 tttacataagctctaaaataagccaatccaaac 14942391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 696
Target Start/End: Complemental strand, 35453456 - 35453392
Alignment:
Q  632 taaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 696  Q
    ||||||||| |||||||||| ||  ||||||||||| ||||||||  ||||||||||||| ||||    
T  35453456 taaacttatgaataatacataaaagcttatttatttgcataagctaaaaaataagccaattcaaa 35453392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 692
Target Start/End: Original strand, 402129 - 402188
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 692  Q
    ||||||||||||||||||| || |||||||||||||| | ||||  |||||||| |||||    
T  402129 aaacttataaataatacataaaaacttatttatttacgttagctaaaaaataagacaatc 402188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 676
Target Start/End: Complemental strand, 30974030 - 30973991
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  30974030 ttataaataatacattaatgcttctttatttacataagct 30973991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 42102152 - 42102109
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42102152 aaacttataaataatacataaaaacttatttatttgcataagct 42102109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 42363357 - 42363400
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42363357 aaacttataaataatacataaaaacttatttatttgcataagct 42363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 665 - 699
Target Start/End: Complemental strand, 2563357 - 2563323
Alignment:
Q  665 tttacataagctctaaaataagccaatccaaacga 699  Q
    ||||||||| |||||||||||||||||||||||||    
T  2563357 tttacataacctctaaaataagccaatccaaacga 2563323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 698
Target Start/End: Complemental strand, 18396953 - 18396916
Alignment:
Q  661 tttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  18396953 tttatttgcataagctcaaaaataagccaatccaaacg 18396916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 698
Target Start/End: Complemental strand, 30973984 - 30973955
Alignment:
Q  669 cataagctctaaaataagccaatccaaacg 698  Q
    ||||||||||||||||||||||||||||||    
T  30973984 cataagctctaaaataagccaatccaaacg 30973955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 637 - 697
Target Start/End: Complemental strand, 38524129 - 38524069
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||    
T  38524129 ttataaataatacattaatacttatttatttgcataaactctaaaataagttaatccaaac 38524069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 636 - 696
Target Start/End: Original strand, 37601071 - 37601131
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 696  Q
    |||||||||||||||||||   |||||||||| |||||||||||||||||| |||||||||    
T  37601071 cttataaataatacattaacgtttatttatttgcataagctctaaaataagtcaatccaaa 37601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 43376737 - 43376678
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||||||||||||||||| ||  |||||||| |||||||| |||||||||| |||||||||    
T  43376737 cttataaataatacattaagac--atttatttgcataagctgtaaaataagctaatccaaac 43376678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 658 - 698
Target Start/End: Original strand, 45331361 - 45331401
Alignment:
Q  658 ttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  45331361 ttatttatttacataagctaaaaaataagccaatccaaacg 45331401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 676
Target Start/End: Complemental strand, 3645344 - 3645305
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  3645344 ttataaataatacataaaaacttatttatttacataagct 3645305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 676
Target Start/End: Complemental strand, 20894544 - 20894505
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  20894544 ttataaataatacataaaaacttatttatttacataagct 20894505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 676
Target Start/End: Complemental strand, 29614235 - 29614196
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  29614235 ttataaataatacataaaaacttatttatttacataagct 29614196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 698
Target Start/End: Original strand, 2086782 - 2086811
Alignment:
Q  669 cataagctctaaaataagccaatccaaacg 698  Q
    ||||||||||||||||||||||||||||||    
T  2086782 cataagctctaaaataagccaatccaaacg 2086811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 4257342 - 4257383
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataag 674  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  4257342 aaacttataaataatacataaaaacttatttatttgcataag 4257383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 698
Target Start/End: Complemental strand, 4974306 - 4974277
Alignment:
Q  669 cataagctctaaaataagccaatccaaacg 698  Q
    ||||||||||||||||||||||||||||||    
T  4974306 cataagctctaaaataagccaatccaaacg 4974277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 698
Target Start/End: Complemental strand, 19307874 - 19307817
Alignment:
Q  641 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||||||| ||||| ||||||||||||| ||| |||||||||| |  ||||||||||    
T  19307874 aaataatactttaatgcttatttatttacgtaaactctaaaatatgttaatccaaacg 19307817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 45049415 - 45049480
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||||||||| |||| |||||| ||| |||||||  |||| || ||||||||| |||||||||||    
T  45049415 aaacttataaacaatatattaatgcttgtttatttgtataaactttaaaataagtcaatccaaacg 45049480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 637 - 704
Target Start/End: Original strand, 2624 - 2691
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccct 704  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| |||||| |||||    
T  2624 ttataaataatacattaatacttctttatttgcataaactctaaaataagtcaatacaaacggcccct 2691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 635 - 702
Target Start/End: Original strand, 22397348 - 22397415
Alignment:
Q  635 acttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccc 702  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||  |||| ||||||||||    
T  22397348 acttataaataatacattaatatttatttatttgtataagctctaaaataaatcaattcaaacgaccc 22397415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 636 - 691
Target Start/End: Original strand, 43983426 - 43983481
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaat 691  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  43983426 cttataaataatacattaatgcttatttatttgtataagctctaaaataagccaat 43983481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 636 - 698
Target Start/End: Complemental strand, 7148814 - 7148752
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  7148814 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 7148752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 698
Target Start/End: Complemental strand, 2141682 - 2141621
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    |||||||||| |||| ||  ||||||||||| ||||||||||||||||||| ||| ||||||    
T  2141682 ttataaataacacataaaagcttatttatttgcataagctctaaaataagctaattcaaacg 2141621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 26206398 - 26206459
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    |||||||||||||||| || || ||||||||| ||||| ||||||||||||  |||||||||    
T  26206398 cttataaataatacataaagacatatttatttgcataaactctaaaataagataatccaaac 26206459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 642 - 706
Target Start/End: Original strand, 48591474 - 48591538
Alignment:
Q  642 aataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccctta 706  Q
    ||||||| || || |||||||||||| |||||||||  |||||||||||||| ||||| ||||||    
T  48591474 aataatatataaaaacttatttatttgcataagctcagaaataagccaatcctaacgaaccctta 48591538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 638 - 698
Target Start/End: Original strand, 54412093 - 54412153
Alignment:
Q  638 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    |||||||||||||| || | |||||||||| |||||| |  ||||||||||||||||||||    
T  54412093 tataaataatacataaaaatttatttatttgcataagttaaaaaataagccaatccaaacg 54412153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 2702756 - 2702799
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    |||||||||||||||||| |||||||||||||| | ||||||||    
T  2702756 aaacttataaataatacactaatacttatttatgtgcataagct 2702799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 676
Target Start/End: Complemental strand, 15184588 - 15184549
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15184588 ttataaataatacataaaaacttatttatttacataagct 15184549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 691
Target Start/End: Complemental strand, 55853041 - 55852998
Alignment:
Q  648 acattaatacttatttatttacataagctctaaaataagccaat 691  Q
    ||||||||||||||||||||||||||  |||||||||| |||||    
T  55853041 acattaatacttatttatttacataaattctaaaataaaccaat 55852998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 674
Target Start/End: Original strand, 52700588 - 52700626
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataag 674  Q
    |||||||||||||||| || |||||||||||||||||||    
T  52700588 cttataaataatacataaagacttatttatttacataag 52700626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Complemental strand, 9201696 - 9201655
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataag 674  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  9201696 aaacttataaataatacataaaaacttatttatttgcataag 9201655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 698
Target Start/End: Original strand, 9319170 - 9319211
Alignment:
Q  657 cttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||||||||||||||||||  |||||||||||| |||||||    
T  9319170 cttatttatttacataagctaaaaaataagccaaaccaaacg 9319211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 52274164 - 52274225
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||| |||||||||| ||   |||||||||| ||||||||| ||||||||||||| |||||    
T  52274164 cttatcaataatacataaaagtttatttatttgcataagctcaaaaataagccaattcaaac 52274225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 633 - 707
Target Start/End: Complemental strand, 8410194 - 8410120
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaa 707  Q
    |||||||| |||||||||| || |||||||||||| |||| |||||||||||||| ||| ||||||| |||||||    
T  8410194 aaacttatgaataatacataaaaacttatttatttgcataggctctaaaataagctaattcaaacgagcccttaa 8410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 692
Target Start/End: Original strand, 6337800 - 6337856
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 692  Q
    ||||| |||||||||| ||  |||||||||||||||||||||||||||||| |||||    
T  6337800 cttatgaataatacataaaagcttatttatttacataagctctaaaataagtcaatc 6337856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 696
Target Start/End: Complemental strand, 48819341 - 48819281
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 696  Q
    ||||| |||||||||||||  || |||||||| ||||||||| ||||||||||||||||||    
T  48819341 cttatgaataatacattaaagctcatttatttgcataagctcaaaaataagccaatccaaa 48819281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 15235201 - 15235244
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15235201 aaacttataaataatacataaaaacttatttatttacataagct 15235244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 15791429 - 15791386
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15791429 aaacttataaataatacataaaaacttatttatttacataagct 15791386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 703
Target Start/End: Complemental strand, 28870261 - 28870199
Alignment:
Q  641 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccc 703  Q
    ||||||||||| |||  |||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  28870261 aaataatacataaatgtttatttatttgcataagctcaaaaataagccaatctaaacgccccc 28870199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 667
Target Start/End: Complemental strand, 29333462 - 29333428
Alignment:
Q  633 aaacttataaataatacattaatacttatttattt 667  Q
    |||||||||||||||||||||||||||||||||||    
T  29333462 aaacttataaataatacattaatacttatttattt 29333428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 676
Target Start/End: Original strand, 37148136 - 37148177
Alignment:
Q  635 acttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37148136 acttataaataatacattaatgcttatttatttgcataagct 37148177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 676
Target Start/End: Original strand, 37156961 - 37157002
Alignment:
Q  635 acttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37156961 acttataaataatacattaatgcttatttatttgcataagct 37157002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 22088452 - 22088495
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    |||||| |||||||||||| || |||||||||||||||||||||    
T  22088452 aaacttgtaaataatacataaaaacttatttatttacataagct 22088495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 32497312 - 32497355
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  32497312 aaacttataaataatacataaaaacttatttatttgcataagct 32497355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 51162314 - 51162271
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||    
T  51162314 aaacttgtaaataatacattaatgcttatttatttgcataagct 51162271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 699
Target Start/End: Complemental strand, 37431187 - 37431145
Alignment:
Q  657 cttatttatttacataagctctaaaataagccaatccaaacga 699  Q
    ||||||||||| || |||||| |||||||||||||||||||||    
T  37431187 cttatttatttgcacaagctcaaaaataagccaatccaaacga 37431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Complemental strand, 41003432 - 41003391
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataag 674  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  41003432 aaacttataaataatacataaaaacttatttatttgcataag 41003391  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 2034270 - 2034335
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||||||||||||||||| ||  ||||||||||| ||||||||| |||| |||||||||||||||    
T  2034270 aaacttataaataatacataaaagcttatttatttgcataagctcaaaaacaagccaatccaaacg 2034335  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 637 - 698
Target Start/End: Original strand, 32165305 - 32165366
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||||||||||||| || |||||||||||| ||||| ||||||||||||| ||||||||||    
T  32165305 ttataaataatacataaaaacttatttattttcataaactctaaaataagctaatccaaacg 32165366  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 698
Target Start/End: Original strand, 8011135 - 8011166
Alignment:
Q  667 tacataagctctaaaataagccaatccaaacg 698  Q
    ||||||||||||||||||||||||||||||||    
T  8011135 tacataagctctaaaataagccaatccaaacg 8011166  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 10184370 - 10184413
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    |||||||||||||||| || || |||||||||||||||||||||    
T  10184370 aaacttataaataatagataaaaacttatttatttacataagct 10184413  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 10755324 - 10755385
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||  |||||||||||||||||||    
T  10755324 cttatgaataatacgtaaaagcttatttatttgcataagctaaaaaataagccaatccaaac 10755385  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 636 - 698
Target Start/End: Complemental strand, 40697043 - 40696981
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    |||||||||||||||| || |||||||||||| ||||||||| |||||||| |||| ||||||    
T  40697043 cttataaataatacataaaaacttatttatttgcataagctcaaaaataagtcaattcaaacg 40696981  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 643 - 698
Target Start/End: Complemental strand, 1943045 - 1942990
Alignment:
Q  643 ataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||||||| || ||||||||| || ||||||||| ||||||||||||||||||||    
T  1943045 ataatacataaaaacttatttacttgcataagctcaaaaataagccaatccaaacg 1942990  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 15414037 - 15413994
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  15414037 aaacttatcaataatacattaatacttatttatttgcataagct 15413994  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 633 - 696
Target Start/End: Original strand, 38461323 - 38461386
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 696  Q
    ||||||||||||||||||| ||  |||||||||||  |||||||||||||||||  ||||||||    
T  38461323 aaacttataaataatacataaaggcttatttatttttataagctctaaaataagttaatccaaa 38461386  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 698
Target Start/End: Complemental strand, 42706838 - 42706776
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 698  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  42706838 cttatgaataatacttaaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 42706776  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 633 - 697
Target Start/End: Complemental strand, 28357397 - 28357333
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    |||||||||||||||||||  |  | ||||||||| |||||||| |||||||||| |||||||||    
T  28357397 aaacttataaataatacatataggcatatttatttgcataagctttaaaataagctaatccaaac 28357333  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 676
Target Start/End: Original strand, 5203478 - 5203517
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  5203478 ttataaataatacataaatacttatttatttgcataagct 5203517  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 25332279 - 25332322
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||    
T  25332279 aaacttataaataatatattaatgcttatttatttgcataagct 25332322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 33757133 - 33757090
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  33757133 aaacttataaataatacataaaaacttatttatttgcataagct 33757090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 41534665 - 41534604
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||| |||||||||| ||  ||||||||||| ||||| ||  |||||||||||||||||||    
T  41534665 cttatgaataatacataaaagcttatttatttgcataatctgaaaaataagccaatccaaac 41534604  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 47511085 - 47511024
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| |||||||||||||||||||    
T  47511085 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaac 47511024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 697
Target Start/End: Complemental strand, 29378690 - 29378626
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||| ||||||||||||| ||  ||||||||||| ||||||||| || ||||||||||||||||    
T  29378690 aaactcataaataatacataaaagcttatttatttgcataagctcaaagataagccaatccaaac 29378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 24371447 - 24371490
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagct 676  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  24371447 aaacttataaataatacattaaaacttatttatttgcataagct 24371490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 43818923 - 43818982
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    |||||||||||||||| || ||  |||||||| ||||||||||||||||||| |||||||||    
T  43818923 cttataaataatacataaagac--atttatttgcataagctctaaaataagctaatccaaac 43818982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 674
Target Start/End: Original strand, 18260890 - 18260927
Alignment:
Q  637 ttataaataatacattaatacttatttatttacataag 674  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18260890 ttataactaatacattaatacttatttatttacataag 18260927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 676
Target Start/End: Original strand, 21027548 - 21027597
Alignment:
Q  627 cttactaaacttataaataatacattaatacttatttatttacataagct 676  Q
    |||| |||||||||||||||||||| || |||||||| ||||||||||||    
T  21027548 cttaataaacttataaataatacataaaaacttatttgtttacataagct 21027597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 30094775 - 30094836
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||||||||||| ||||| ||  ||||||||  |||||||||||||||||| |||||||||    
T  30094775 cttataaataatatattaagacacatttatttgtataagctctaaaataagctaatccaaac 30094836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 674
Target Start/End: Complemental strand, 35809132 - 35809094
Alignment:
Q  636 cttataaataatacattaatacttatttatttacataag 674  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  35809132 cttataaataatacattaatgcttatttatttgcataag 35809094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 675
Target Start/End: Original strand, 42083458 - 42083500
Alignment:
Q  633 aaacttataaataatacattaatacttatttatttacataagc 675  Q
    |||||||| |||||||||| || ||||||||||||||||||||    
T  42083458 aaacttatgaataatacataaaaacttatttatttacataagc 42083500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 697
Target Start/End: Complemental strand, 46743989 - 46743931
Alignment:
Q  639 ataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 697  Q
    ||||||||||||| ||  ||||||||||| ||| ||||| ||| |||||||||||||||    
T  46743989 ataaataatacataaaatcttatttatttgcatgagctcaaaagtaagccaatccaaac 46743931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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