View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8370_low_11 (Length: 390)
Name: NF8370_low_11
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8370_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 191 - 359
Target Start/End: Original strand, 6716442 - 6716611
Alignment:
| Q |
191 |
tttagactaaaattcaaagttttaatttttgttggctttcttgaattttatgttggctttcttgtgttgacttcaacgaaaggtattcatttttcatttt |
290 |
Q |
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| T |
6716442 |
tttagactaaaattcaaagtttgaatttttgttggctttcttgaattttatgttggctttcttgtgttgacttcaacgaaaggtatttatttttcatttt |
6716541 |
T |
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| Q |
291 |
cgatcaaatacagcagtatgaagagaaaaaat-ggaaaatattgttagtttgttatttaagttttaattg |
359 |
Q |
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| T |
6716542 |
cgaccaaatacaacagtatgaaaagaaaaaatgggaaaatattgttagtttgttatttaagttttaattg |
6716611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 6716365 - 6716414
Alignment:
| Q |
114 |
ttcaatgaaagttaatcattgttcatttacattcaaatatattattatac |
163 |
Q |
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| T |
6716365 |
ttcaatgaaagttaatcattgttcatttacattcaaatatatcattatac |
6716414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 6716268 - 6716308
Alignment:
| Q |
17 |
atatatatcattatgcaaaaactaaaatcaaaacggggaaa |
57 |
Q |
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| T |
6716268 |
atatatatcattatgcaaaaactaaaatcaaaatggggaaa |
6716308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 359
Target Start/End: Original strand, 6721649 - 6721749
Alignment:
| Q |
263 |
tcaacgaaaggtattcatttttcattttcgatcaaatacagcagtatgaagagaaaa--aat--ggaaaatattgttagtttgttatttaagttttaatt |
358 |
Q |
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| T |
6721649 |
tcaatgaaaggtgttcattgttaattttcaaccaaatacagcagtatgaaaagaaaaataatggggaaaataatgttagcttgttattcaagtttcaatt |
6721748 |
T |
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| Q |
359 |
g |
359 |
Q |
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| T |
6721749 |
g |
6721749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 42230135 - 42230094
Alignment:
| Q |
114 |
ttcaatgaaagttaatcattgttcatttacattcaaatatat |
155 |
Q |
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| T |
42230135 |
ttcaatgaaagttaatcattattcatttacactcatatatat |
42230094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 42230790 - 42230758
Alignment:
| Q |
112 |
agttcaatgaaagttaatcattgttcatttaca |
144 |
Q |
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| T |
42230790 |
agttcaatgaaagttaatcatttttcatttaca |
42230758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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