View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8370_low_13 (Length: 320)

Name: NF8370_low_13
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8370_low_13
NF8370_low_13
[»] chr6 (57 HSPs)
chr6 (18-305)||(26048577-26048864)
chr6 (18-305)||(26069746-26070033)
chr6 (18-305)||(26142597-26142884)
chr6 (18-305)||(25481474-25481761)
chr6 (18-305)||(26055658-26055945)
chr6 (18-305)||(26075628-26075915)
chr6 (22-305)||(25538276-25538559)
chr6 (18-305)||(25579453-25579738)
chr6 (180-305)||(27718547-27718672)
chr6 (180-305)||(26802336-26802461)
chr6 (180-305)||(27611170-27611295)
chr6 (180-305)||(27604873-27604998)
chr6 (180-305)||(27698662-27698787)
chr6 (180-305)||(27725013-27725138)
chr6 (180-305)||(28781033-28781158)
chr6 (180-305)||(28786172-28786297)
chr6 (180-305)||(28792293-28792418)
chr6 (180-305)||(26655883-26656008)
chr6 (180-305)||(26761854-26761979)
chr6 (180-305)||(27229126-27229251)
chr6 (180-305)||(27531365-27531490)
chr6 (181-304)||(27338234-27338357)
chr6 (181-304)||(27398974-27399097)
chr6 (56-177)||(27605040-27605165)
chr6 (184-305)||(26646377-26646498)
chr6 (184-305)||(26752345-26752466)
chr6 (184-305)||(26861514-26861635)
chr6 (101-177)||(27718708-27718784)
chr6 (184-305)||(27593188-27593309)
chr6 (184-305)||(27678844-27678965)
chr6 (184-305)||(31284186-31284307)
chr6 (101-177)||(26655771-26655847)
chr6 (101-177)||(26761742-26761818)
chr6 (101-177)||(28780921-28780997)
chr6 (101-177)||(28786060-28786136)
chr6 (102-169)||(27611339-27611406)
chr6 (103-177)||(27725174-27725248)
chr6 (180-305)||(26622870-26622995)
chr6 (180-305)||(26728848-26728973)
chr6 (104-177)||(28792184-28792257)
chr6 (101-177)||(26823628-26823704)
chr6 (101-177)||(27698823-27698898)
chr6 (180-297)||(26884057-26884174)
chr6 (43-177)||(27228958-27229090)
chr6 (109-177)||(31284078-31284146)
chr6 (184-305)||(27677782-27677903)
chr6 (121-177)||(27678748-27678804)
chr6 (223-266)||(27427810-27427853)
chr6 (223-281)||(26949598-26949656)
chr6 (121-175)||(27706733-27706787)
chr6 (181-278)||(27214312-27214409)
chr6 (181-278)||(27234819-27234916)
chr6 (145-177)||(26646299-26646331)
chr6 (145-177)||(26752267-26752299)
chr6 (129-177)||(27338394-27338442)
chr6 (129-177)||(27399134-27399182)
chr6 (24-64)||(27611445-27611485)
[»] scaffold0349 (5 HSPs)
scaffold0349 (180-305)||(3590-3715)
scaffold0349 (180-305)||(14523-14648)
scaffold0349 (101-177)||(8130-8206)
scaffold0349 (103-177)||(3751-3825)
scaffold0349 (101-177)||(14684-14759)
[»] scaffold0277 (4 HSPs)
scaffold0277 (180-305)||(4839-4964)
scaffold0277 (180-305)||(13800-13925)
scaffold0277 (101-177)||(13961-14037)
scaffold0277 (104-177)||(5000-5073)
[»] scaffold1254 (2 HSPs)
scaffold1254 (180-305)||(85-210)
scaffold1254 (121-174)||(249-302)
[»] scaffold0419 (2 HSPs)
scaffold0419 (180-305)||(7419-7544)
scaffold0419 (121-174)||(7327-7380)
[»] chr4 (12 HSPs)
chr4 (180-278)||(18724267-18724365)
chr4 (180-278)||(18679749-18679847)
chr4 (106-177)||(18699716-18699787)
chr4 (180-278)||(18655659-18655757)
chr4 (106-177)||(18655793-18655864)
chr4 (106-177)||(18679883-18679954)
chr4 (106-177)||(18731820-18731891)
chr4 (180-278)||(18699582-18699680)
chr4 (180-278)||(18731686-18731784)
chr4 (223-266)||(17989244-17989287)
chr4 (223-266)||(18073702-18073745)
chr4 (148-177)||(18724401-18724430)
[»] chr1 (4 HSPs)
chr1 (180-305)||(28164517-28164642)
chr1 (180-299)||(28127841-28127960)
chr1 (230-305)||(268512-268587)
chr1 (127-177)||(28127990-28128040)
[»] chr2 (1 HSPs)
chr2 (223-305)||(17993852-17993934)
[»] scaffold0003 (1 HSPs)
scaffold0003 (223-266)||(59510-59553)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 57)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 26048577 - 26048864
Alignment:
Q  18 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccatctcacagaccacaccaattgctcattcatattctcca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  26048577 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccacctaacagaccacacaaattactcattcatattctcca 26048676  T
Q  118 ttttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaaca 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26048677 ttttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaaca 26048776  T
Q  218 attttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26048777 attttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgataatgatcttgaaagaggagatgaaat 26048864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 26069746 - 26070033
Alignment:
Q  18 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccatctcacagaccacaccaattgctcattcatattctcca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  26069746 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccacctaacagaccacacaaattactcattcatattctcca 26069845  T
Q  118 ttttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaaca 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26069846 ttttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaaca 26069945  T
Q  218 attttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26069946 attttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgataatgatcttgaaagaggagatgaaat 26070033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 26142597 - 26142884
Alignment:
Q  18 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccatctcacagaccacaccaattgctcattcatattctcca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  26142597 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccacctaacagaccacacaaattactcattcatattctcca 26142696  T
Q  118 ttttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaaca 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26142697 ttttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaaca 26142796  T
Q  218 attttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26142797 aatttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 26142884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 25481474 - 25481761
Alignment:
Q  18 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccatctcacagaccacaccaattgctcattcatattctcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  25481474 gttgcaaggaagtttcacttactacttttgtcattagttttctccttcttttaaagaatccacctaacagaccacacaaattactcattcatattctcca 25481573  T
Q  118 ttttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaaca 217  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  25481574 ttttcaaagttttttttcatccaaattctttcaattctcatggctatgcaatcaccttccagagtgttcctcaatttcaggggcagtgacactcgcaaca 25481673  T
Q  218 attttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  25481674 attttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaaaatgatcttcaaagaggagatgaaat 25481761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 26055658 - 26055945
Alignment:
Q  18 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccatctcacagaccacaccaattgctcattcatattctcca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  26055658 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccacctaacagaccacacaaattactcattcatattctcca 26055757  T
Q  118 ttttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaaca 217  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  26055758 ttttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcctgagtgttcctcattttcaggggcagtgacactcgcaaca 26055857  T
Q  218 attttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||    
T  26055858 attttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaaaatgatcttcaaagaggagatgaaat 26055945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 26075628 - 26075915
Alignment:
Q  18 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccatctcacagaccacaccaattgctcattcatattctcca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  26075628 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccacctaacagaccacacaaattactcattcatattctcca 26075727  T
Q  118 ttttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaaca 217  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  26075728 ttttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttccagagtgttcctcaatttcaggggcagtgacactcgcaaca 26075827  T
Q  218 attttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||    
T  26075828 attttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaaaatgatcttcaaagaggagatgaaat 26075915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 305
Target Start/End: Original strand, 25538276 - 25538559
Alignment:
Q  22 caaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccatctcacagaccacaccaattgctcattcatattctccatttt 121  Q
    ||||||||||||||  |||| |||||||||||||||   ||||||||||||||||||| || ||||||||||| ||||  ||||||||||||||||||||    
T  25538276 caaggaagtttcacaaactatttttgtcattagtttaaaccttgttttaaagaatccacctaacagaccacacaaattaatcattcatattctccatttt 25538375  T
Q  122 caaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaacaattt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25538376 caaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaacaaatt 25538475  T
Q  222 taccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  25538476 taccggtaatctctataaggctcttgttgacaagggaattagtactttcatagatgataatgatcttgaaagaggagatgaaat 25538559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 25579453 - 25579738
Alignment:
Q  18 gttgcaaggaagtttcacttactacttttgtcattagttttctccttgttttaaagaatccatctcacagaccacaccaattgctcattcatattctcca 117  Q
    |||||||||||||||||| ||| |||||||||||||||||||||    |||||||||||||| ||||||||||||||  ||| |||||||||||||||||    
T  25579453 gttgcaaggaagtttcacatacgacttttgtcattagttttctc----ttttaaagaatccacctcacagaccacacacattactcattcatattctcca 25579548  T
Q  118 ttttcaaagtcttttt--tcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcaggggcagtgacactcgcaa 215  Q
    |||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25579549 ttttcaaagtttttttattcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtgttcctcagtttcagaggcagtgacactcgcaa 25579648  T
Q  216 caattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||    
T  25579649 cacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgataatgatcttcaaagaggagatgaaat 25579738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 27718672 - 27718547
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||||||  ||| ||||||||| |||||||| |||||||||| |||||||||||| | ||| |||||||||||     
T  27718672 agtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27718573  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  27718572 aatgatcttcaaagaggagatgaaat 27718547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 26802336 - 26802461
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||||||||||||||||| | ||| |||||||||||     
T  26802336 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 26802435  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  26802436 aatgatcttcaaagaggagatgaaat 26802461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 27611295 - 27611170
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| |||||||||||     
T  27611295 agtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27611196  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    |||||||||  |||||||||||||||    
T  27611195 aatgatcttccaagaggagatgaaat 27611170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 27604998 - 27604873
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||||| ||| |||||||||||     
T  27604998 agtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaattcataccttcattgatgaa 27604899  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    |||||||||  |||||||||||||||    
T  27604898 aatgatcttcgaagaggagatgaaat 27604873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 27698787 - 27698662
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||| ||||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| |||||||||||     
T  27698787 agtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27698688  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  27698687 aatgatcttcaaagaggagatgaaat 27698662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 27725138 - 27725013
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| |||||||||||     
T  27725138 agtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27725039  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  27725038 aatgatcttcaaagaggagatgaaat 27725013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 28781033 - 28781158
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || |||||||||||     
T  28781033 agtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 28781132  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  28781133 aatgatcttcaaagaggagatgaaat 28781158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 28786172 - 28786297
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || |||||||||||     
T  28786172 agtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 28786271  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  28786272 aatgatcttcaaagaggagatgaaat 28786297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 28792293 - 28792418
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || |||||||||||     
T  28792293 agtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 28792392  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  28792393 aatgatcttcaaagaggagatgaaat 28792418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 26655883 - 26656008
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||| ||  ||  ||||||||| |||||||| |||||||||||||| |||||||| | |||||||||||||||     
T  26655883 agtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgac 26655982  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    |||||||||   ||||||||||||||    
T  26655983 aatgatcttctcagaggagatgaaat 26656008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 26761854 - 26761979
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||| ||  ||  ||||||||| |||||||| |||||||||||||| |||||||| | |||||||||||||||     
T  26761854 agtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgac 26761953  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    |||||||||   ||||||||||||||    
T  26761954 aatgatcttctcagaggagatgaaat 26761979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 27229126 - 27229251
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| |||||||||||     
T  27229126 agtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27229225  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| |||||||||| |||||    
T  27229226 aatgatcttcaaagaggagacgaaat 27229251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 27531490 - 27531365
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||   ||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||   ||| |||||||||||     
T  27531490 agtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattgatgac 27531391  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  27531390 aatgatcttcaaagaggagatgaaat 27531365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 304
Target Start/End: Complemental strand, 27338357 - 27338234
Alignment:
Q  181 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgata 280  Q
    |||||||||||||| |||| || ||||||||   ||  ||||||||| |||||||| |||||||||||||||||||||||    || ||||||||||| |    
T  27338357 gtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgaca 27338258  T
Q  281 atgatcttgaaagaggagatgaaa 304  Q
    | ||||||||||||||||||||||    
T  27338257 acgatcttgaaagaggagatgaaa 27338234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 304
Target Start/End: Complemental strand, 27399097 - 27398974
Alignment:
Q  181 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgata 280  Q
    |||||||||||||| |||| || ||||||||   ||  ||||||||| |||||||| |||||||||||||||||||||||    || ||||||||||| |    
T  27399097 gtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgaca 27398998  T
Q  281 atgatcttgaaagaggagatgaaa 304  Q
    | ||||||||||||||||||||||    
T  27398997 acgatcttgaaagaggagatgaaa 27398974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 27605165 - 27605040
Alignment:
Q  56 tttctccttgtt---ttaaagaatccatctcacagaccacaccaa-ttgctcattcatattctccattttcaaagtcttttttcatccaaattctttcaa 151  Q
    ||||||||||||   ||||||| ||||  ||||||||||||  || || |||||||||||||| |||| ||||| ||||||||||||||| |||| ||||    
T  27605165 tttctccttgttatattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaa 27605066  T
Q  152 ttctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||||||| |||||||    
T  27605065 ttctcatggctatgcaattaccttcc 27605040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 26646377 - 26646498
Alignment:
Q  184 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatg 283  Q
    |||||||  ||||||||||||||||||||  ||  |||||| ||  ||||||| |||||||||| ||||||||||||||  || ||||||||||||  ||    
T  26646377 ttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtg 26646476  T
Q  284 atcttgaaagaggagatgaaat 305  Q
    ||||| | ||||||||||||||    
T  26646477 atcttaagagaggagatgaaat 26646498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 26752345 - 26752466
Alignment:
Q  184 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatg 283  Q
    |||||||  ||||||||||||||||||||  ||  |||||| ||  ||||||| |||||||||| ||||||||||||||  || ||||||||||||  ||    
T  26752345 ttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtg 26752444  T
Q  284 atcttgaaagaggagatgaaat 305  Q
    ||||| | ||||||||||||||    
T  26752445 atcttaagagaggagatgaaat 26752466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 26861514 - 26861635
Alignment:
Q  184 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatg 283  Q
    |||||||||||||| || |||||||||||  |   |||||||||||||||||| |||||||||| ||||||||||||||  || ||||| ||||||  ||    
T  26861514 ttcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatgatcgtg 26861613  T
Q  284 atcttgaaagaggagatgaaat 305  Q
    | ||| ||||||| ||||||||    
T  26861614 aacttcaaagaggggatgaaat 26861635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 27718784 - 27718708
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||| |||| ||||| ||||||||||||| | |||| ||||||||||||||||| ||||||||||||    
T  27718784 ctcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttcc 27718708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 27593309 - 27593188
Alignment:
Q  184 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatg 283  Q
    |||||||||||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||| ||||||||||||    || ||||||||||| ||||    
T  27593309 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatg 27593210  T
Q  284 atcttgaaagaggagatgaaat 305  Q
     |||| |||||||| |||||||    
T  27593209 gtcttcaaagaggaaatgaaat 27593188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 27678844 - 27678965
Alignment:
Q  184 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatg 283  Q
    |||||||||||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||| ||||||||||||    || ||||||||| | ||||    
T  27678844 ttcctcagtttcagaggaagtgacactcggtacggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatg 27678943  T
Q  284 atcttgaaagaggagatgaaat 305  Q
     |||| ||||||||||||||||    
T  27678944 gtcttcaaagaggagatgaaat 27678965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 31284186 - 31284307
Alignment:
Q  184 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatg 283  Q
    ||||| ||||||||||| |||||||||||  |   ||| ||||| |||||||| |||||||||| |||||||||||| |  || ||||||||||||| ||    
T  31284186 ttccttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtg 31284285  T
Q  284 atcttgaaagaggagatgaaat 305  Q
    | ||| ||||||| ||||||||    
T  31284286 aacttcaaagaggggatgaaat 31284307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 26655771 - 26655847
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||| ||||  |||| ||||||||||||||  |||| ||||||||||||||||| ||||||||||||    
T  26655771 ctcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttcc 26655847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 26761742 - 26761818
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||| ||||  |||| ||||||||||||||  |||| ||||||||||||||||| ||||||||||||    
T  26761742 ctcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttcc 26761818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 28780921 - 28780997
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||||||||  ||| ||||| ||||||||||||||| |||| |||||| ||||||||||||||| |||||||    
T  28780921 ctcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttcc 28780997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 28786060 - 28786136
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| |||||||| ||||||||||||    
T  28786060 ctcattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcc 28786136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 27611406 - 27611339
Alignment:
Q  102 tcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaat 169  Q
    ||||||||||||| |||| ||||| ||||||||||||||| |||| |||||| |||||||||||||||    
T  27611406 tcattcatattctgcattctcaaactcttttttcatccaatttctctcaattttcatggctatgcaat 27611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 27725248 - 27725174
Alignment:
Q  103 cattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||| |||| ||||| ||||||||||||| | |||| |||||| |||||||||| ||||||||||||    
T  27725248 cattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttcc 27725174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 26622870 - 26622995
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||| |||||||| ||||||||||||||  ||  ||| || || |||||||| |||||||||| |||||||||||| |  || ||||||||||||    
T  26622870 agtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgat 26622969  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
      ||| ||| ||||||| || |||||    
T  26622970 cgtgaacttcaaagaggggacgaaat 26622995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 26728848 - 26728973
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||| |||||||| ||||||||||||||  ||  ||| || || |||||||| |||||||||| |||||||||||| |  || ||||||||||||    
T  26728848 agtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgat 26728947  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
      ||| ||| ||||||| || |||||    
T  26728948 cgtgaacttcaaagaggggacgaaat 26728973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 28792184 - 28792257
Alignment:
Q  104 attcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| |||||||| ||||||||||||    
T  28792184 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcc 28792257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 26823628 - 26823704
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||| |||| ||||| ||||| ||| ||||| |||| |||||||||||||||||||| ||| |||||    
T  26823628 ctcattcatattctgcattctcaaactctttcttcgtccaatttctctcaattctcatggctatgcagtcaacttcc 26823704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 27698898 - 27698823
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||| |||| ||||| ||||||| ||||| | |||| ||||||||||||||||| ||||||||||||    
T  27698898 ctcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttcc 27698823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 297
Target Start/End: Original strand, 26884057 - 26884174
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    |||||||||||||||||| || |||||||||||  |   ||| || || |||||||| |||||||||| | |||||||||| |  || ||||||||||||    
T  26884057 agtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctcttactaacaagggaatccacaccttcattgatgat 26884156  T
Q  280 aatgatcttgaaagagga 297  Q
    ||| |||||  |||||||    
T  26884157 aatcatcttccaagagga 26884174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 27228958 - 27229090
Alignment:
Q  43 ttttgtcattagttttctccttgttttaaagaatccatctcacagaccacaccaat-tgctcattcatattctccattttcaaagtcttttttcatccaa 141  Q
    ||||||| | |||||||||||||||||||||  | ||| ||||| ||||||  ||  | |||||||||||||| |||| | ||| ||||||  |||||||    
T  27228958 ttttgtcttaagttttctccttgttttaaagt-tacatatcacataccacaaaaacatactcattcatattctgcattctaaaactctttt--catccaa 27229054  T
Q  142 attctttcaattctcatggctatgcaatcaccttcc 177  Q
     |||| |||| |||||||||||| ||||||||||||    
T  27229055 tttctctcaagtctcatggctatacaatcaccttcc 27229090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 31284078 - 31284146
Alignment:
Q  109 tattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||| |||| ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||| |||||    
T  31284078 tattctgcattctcaaattctttcttcatccatattctctcaaatctcatggctatgcaatcatcttcc 31284146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 27677903 - 27677782
Alignment:
Q  184 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatg 283  Q
    ||||||| |||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||  |||||||||||| |  || ||||||||  || |||    
T  27677903 ttcctcaatttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatg 27677804  T
Q  284 atcttgaaagaggagatgaaat 305  Q
    | ||| ||||||| ||||||||    
T  27677803 aacttcaaagaggggatgaaat 27677782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 27678748 - 27678804
Alignment:
Q  121 tcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||| |||||||||||| || |||| | || |||||||||||||||||||||||||    
T  27678748 tcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcaccttcc 27678804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 27427853 - 27427810
Alignment:
Q  223 accggtaatctctataaggctcttattgacaagggaattcgtac 266  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  27427853 accggcaatctcttgaaggctcttattgacaagggaattcgtac 27427810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 26949598 - 26949656
Alignment:
Q  223 accggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataa 281  Q
    ||||||||||||||||| |||||   |||||||||||| || || ||||||||||||||    
T  26949598 accggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatgataa 26949656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 27706787 - 27706733
Alignment:
Q  121 tcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcacctt 175  Q
    ||||| |||||||||||| || |||| | || |||||||||||||||||||||||    
T  27706787 tcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcacctt 27706733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 27214312 - 27214409
Alignment:
Q  181 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatga 278  Q
    |||||| | ||||||||||| |  ||||||||  ||  ||| ||||||||||||||||| ||||||  |||||| ||||| || || |||||||||||    
T  27214312 gtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatga 27214409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 27234916 - 27234819
Alignment:
Q  181 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatga 278  Q
    |||||| | ||||||||||| |  ||||||||  ||  ||| ||||||||||||||||| ||||||  |||||| ||||| || || |||||||||||    
T  27234916 gtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatga 27234819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 26646299 - 26646331
Alignment:
Q  145 ctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||||||||||||||| ||||||    
T  26646299 ctttcaattctcatggctatgcaatctccttcc 26646331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 26752267 - 26752299
Alignment:
Q  145 ctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||||||||||||||| ||||||    
T  26752267 ctttcaattctcatggctatgcaatctccttcc 26752299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 27338442 - 27338394
Alignment:
Q  129 ttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||||  | |||| ||||||||||||||||||||||||| ||||    
T  27338442 ttttttcatcttatttctctcaattctcatggctatgcaatcactttcc 27338394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 27399182 - 27399134
Alignment:
Q  129 ttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||||  | |||| ||||||||||||||||||||||||| ||||    
T  27399182 ttttttcatcttatttctctcaattctcatggctatgcaatcactttcc 27399134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 27611485 - 27611445
Alignment:
Q  24 aggaagtttcacttactacttttgtcattagttttctcctt 64  Q
    |||||||||||| ||||||||||||| | ||||||||||||    
T  27611485 aggaagtttcacatactacttttgtcgtaagttttctcctt 27611445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 3715 - 3590
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| |||||||||||     
T  3715 agtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 3616  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  3615 aatgatcttcaaagaggagatgaaat 3590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 14648 - 14523
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||| ||||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| |||||||||||     
T  14648 agtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 14549  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  14548 aatgatcttcaaagaggagatgaaat 14523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 8206 - 8130
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||| |||| ||||| ||||||||||||| | |||| ||||||||||||||||| ||||||||||||    
T  8206 ctcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttcc 8130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 3825 - 3751
Alignment:
Q  103 cattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||| |||| ||||| ||||||||||||| | |||| |||||| |||||||||| ||||||||||||    
T  3825 cattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttcc 3751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 14759 - 14684
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||||| |||| ||||| ||||||| ||||| | |||| ||||||||||||||||| ||||||||||||    
T  14759 ctcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttcc 14684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 4964 - 4839
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || |||||||||||     
T  4964 agtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 4865  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  4864 aatgatcttcaaagaggagatgaaat 4839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 13925 - 13800
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || |||||||||||     
T  13925 agtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 13826  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  13825 aatgatcttcaaagaggagatgaaat 13800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 14037 - 13961
Alignment:
Q  101 ctcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||||||||  ||| ||||| ||||||||||||||| |||| |||||| ||||||||||||||| |||||||    
T  14037 ctcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttcc 13961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 5073 - 5000
Alignment:
Q  104 attcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| |||||||| ||||||||||||    
T  5073 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcc 5000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 210 - 85
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||| ||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || |||||||||||     
T  210 agtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 111  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  110 aatgatcttcaaagaggagatgaaat 85  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 302 - 249
Alignment:
Q  121 tcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcacct 174  Q
    ||||| |||||||||||| || |||| |||||||||||||||||||||||||||    
T  302 tcaaactcttttttcatctaatttctctcaattctcatggctatgcaatcacct 249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 7419 - 7544
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||| ||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || |||||||||||     
T  7419 agtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 7518  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
    ||||||||| ||||||||||||||||    
T  7519 aatgatcttcaaagaggagatgaaat 7544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 7327 - 7380
Alignment:
Q  121 tcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcacct 174  Q
    ||||| |||||||||||| || |||| |||||||||||||||||||||||||||    
T  7327 tcaaactcttttttcatctaatttctctcaattctcatggctatgcaatcacct 7380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 18724365 - 18724267
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatga 278  Q
    |||||||||||| |||||||||||||||||||| |||  |||||| ||| ||||||| |||||||||| |||||||||||| |  || |||||||||||    
T  18724365 agtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatga 18724267  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 18679847 - 18679749
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatga 278  Q
    |||||||||||| |||||||||||||||||||| |||  |||||| ||| ||||||| |||||||||| |||||| ||||| |  || |||||||||||    
T  18679847 agtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaaaggaatccacaccttcattgatga 18679749  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 18699787 - 18699716
Alignment:
Q  106 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||| |||| ||||| |||||||||||| |  |||| ||||||||||||||||||||||||||||||    
T  18699787 tcatattctgcattctcaaactcttttttcatctagtttctctcaattctcatggctatgcaatcaccttcc 18699716  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 18655757 - 18655659
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatga 278  Q
    |||||||||||| |||||||||||||||||||| |||  |||||| ||  ||||||| || ||||||| |||||||||||| |  || |||||||||||    
T  18655757 agtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctcttactgacaagggaatccacaccttcattgatga 18655659  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 18655864 - 18655793
Alignment:
Q  106 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||| |||| ||||| ||||||||||||||  |||| |||||| ||||||||| |||||||||||||    
T  18655864 tcatattctgcattctcaaactcttttttcatccagtttctctcaattttcatggctaggcaatcaccttcc 18655793  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 18679954 - 18679883
Alignment:
Q  106 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||| |||| ||||| ||||||||||||||  |||| || ||| |||||||||||||||||||||||    
T  18679954 tcatattctgcattctcaaactcttttttcatccagtttctctctattttcatggctatgcaatcaccttcc 18679883  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 18731891 - 18731820
Alignment:
Q  106 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||| |||| ||||| ||||||||||||||  |||| || ||| |||||||||||||||||||||||    
T  18731891 tcatattctgcattctcaaactcttttttcatccagtttctctcgattttcatggctatgcaatcaccttcc 18731820  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 18699680 - 18699582
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatga 278  Q
    |||||||||||| |||||||||| |||||||||  ||  |||||| ||  ||||||| || ||||||| |||||||||||| |  || |||||||||||    
T  18699680 agtgttcctcagcttcaggggcactgacactcgtgacggttttactggccatctctacaaagctcttactgacaagggaatccacaccttcattgatga 18699582  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 18731784 - 18731686
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatga 278  Q
    |||||||||||| ||||||||||||||||||||  ||  |||||| ||  ||||||| |  ||||||| |||||||||||| |  || |||||||||||    
T  18731784 agtgttcctcagcttcaggggcagtgacactcgtgacggttttactggccatctctacagagctcttactgacaagggaatccacaccttcattgatga 18731686  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 17989287 - 17989244
Alignment:
Q  223 accggtaatctctataaggctcttattgacaagggaattcgtac 266  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  17989287 accggcaatctcttgaaggctcttattgacaagggaattcgtac 17989244  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 18073702 - 18073745
Alignment:
Q  223 accggtaatctctataaggctcttattgacaagggaattcgtac 266  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  18073702 accggcaatctcttgaaggctcttattgacaagggaattcgtac 18073745  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 18724430 - 18724401
Alignment:
Q  148 tcaattctcatggctatgcaatcaccttcc 177  Q
    ||||||||||||||||||||||||||||||    
T  18724430 tcaattctcatggctatgcaatcaccttcc 18724401  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 28164642 - 28164517
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    ||||||||||||||| |||||||||||||||||  ||  ||| || ||  ||||||||||||| |||   |||||||||||||  || ||||||||||||    
T  28164642 agtgttcctcagttttaggggcagtgacactcgtgacggtttcactggccatctctataaggcccttgacgacaagggaattcacacattcattgatgat 28164543  T
Q  280 aatgatcttgaaagaggagatgaaat 305  Q
      ||||||||| |||||||| |||||    
T  28164542 tgtgatcttgagagaggagaagaaat 28164517  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 28127960 - 28127841
Alignment:
Q  180 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgat 279  Q
    |||||||||||| ||||||||||||||||||||  ||  ||| || ||  ||||||| ||||| |||  |||||||||||| |  || ||||||||||||    
T  28127960 agtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggccctttatgacaagggaatccacacattcattgatgat 28127861  T
Q  280 aatgatcttgaaagaggaga 299  Q
      | ||||||| ||||||||    
T  28127860 tgtaatcttgagagaggaga 28127841  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 268587 - 268512
Alignment:
Q  230 atctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    ||||||| |||||||||| |||||||||||| |  || ||||||||||||  ||| ||| ||||||| ||||||||    
T  268587 atctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaat 268512  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 28128040 - 28127990
Alignment:
Q  127 tcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 177  Q
    |||||| |||||||| || | ||||||||||||||||||||||||| ||||    
T  28128040 tcttttctcatccaatttttgtcaattctcatggctatgcaatcacattcc 28127990  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 17993934 - 17993852
Alignment:
Q  223 accggtaatctctataaggctcttattgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaat 305  Q
    ||||||||||||||||| ||||||  ||||||||||||||| || ||||| ||||| || || ||| | ||||| ||||||||    
T  17993934 accggtaatctctataaagctctttctgacaagggaattcgaaccttcatcgatgacaaagagcttcagagaggtgatgaaat 17993852  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 59510 - 59553
Alignment:
Q  223 accggtaatctctataaggctcttattgacaagggaattcgtac 266  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  59510 accggcaatctcttgaaggctcttattgacaagggaattcgtac 59553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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