View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8370_low_14 (Length: 318)
Name: NF8370_low_14
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8370_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 52 - 276
Target Start/End: Original strand, 6721091 - 6721315
Alignment:
| Q |
52 |
gtaataataatgatgatttaataaacaacccgattatgttttctcatcggagattatgatcatataagaaagagatgtacttagtaacttctatcatttt |
151 |
Q |
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| T |
6721091 |
gtaataataatgatgatttaataaacaacccgattatgttttctcatcggagattatgatcatataagaaagagatgtacttagtaacttctatcatttt |
6721190 |
T |
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| Q |
152 |
tacataccaatatatcattatgctgcaaaaaatgtaggaaattttcctattttctacgtaaagttttcatttttatggtcattttacaccaaactacatc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6721191 |
tacataccaatatatcattatgctgcaaaaaatgtagggaattttcctattttctacgtaaagttttcatttttatggtcattttacaccaaactacatc |
6721290 |
T |
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| Q |
252 |
gtcattcaaacaaatttagcagtgt |
276 |
Q |
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|||||||||||||||||||||||| |
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| T |
6721291 |
atcattcaaacaaatttagcagtgt |
6721315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6716636 - 6716674
Alignment:
| Q |
1 |
tattttgagttgagtgaaatatttaacatttttcatgta |
39 |
Q |
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| T |
6716636 |
tattttgagttgagtgaaatatttaacatttttcatgta |
6716674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 6721818 - 6721878
Alignment:
| Q |
52 |
gtaataataatgatgatttaataaacaacccgattatgttttctcatcggagattatgatc |
112 |
Q |
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| T |
6721818 |
gtaataataatgataattagataaacaaccctattatgttttctcatcaaagattatgatc |
6721878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 6715892 - 6715958
Alignment:
| Q |
120 |
aaagagatgtacttagtaacttctatcatttttacataccaatatatcattatgctgcaaaaaatgta |
187 |
Q |
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| T |
6715892 |
aaagggatgtgcttagtaatttctattatttttactt-ccaatatatcattatgctggaagaaatgta |
6715958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6721372 - 6721405
Alignment:
| Q |
1 |
tattttgagttgagtgaaatatttaacatttttc |
34 |
Q |
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| T |
6721372 |
tattttgagttgaatgaaatatttaacatttttc |
6721405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 42230440 - 42230325
Alignment:
| Q |
137 |
aacttctatcatttttacataccaatatatcattatgctgcaaaa-aatgtaggaaattttcctattttctacgtaaagttttcatttttatggtcattt |
235 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||| |||||||| ||| || ||| ||| ||| |||| |||| ||||| | |||||| |
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| T |
42230440 |
aacttctatcatttttatataccaatatatgattatgctgcaaaacaatgtagggaatatttctagtttgtacttaaatttttgtttttttggttcattt |
42230341 |
T |
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| Q |
236 |
tacaccaaactacatc |
251 |
Q |
| |
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|||||| || |||||| |
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| T |
42230340 |
tacacccaaatacatc |
42230325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 42231130 - 42231075
Alignment:
| Q |
128 |
gtacttagtaacttctatcatttttacataccaatatatcattatgctgcaaaaaa |
183 |
Q |
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|||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
42231130 |
gtacttagaaacttctatcatttttacatacaaatatatgattatgctgcaaaaaa |
42231075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 42230663 - 42230581
Alignment:
| Q |
3 |
ttttgagttgagtgaaatatttaacatttttcatgta-----cgtattgaaatcgtaataataatgatgatttaataaacaacc |
81 |
Q |
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||||||||||| |||| |||||||||||||||||||| |||||||| | |||||||| || |||||||||||||||||| |
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| T |
42230663 |
ttttgagttgaatgaa-tatttaacatttttcatgtatgcatcgtattgacgtagtaataatgattatgatttaataaacaacc |
42230581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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