View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8370_low_16 (Length: 286)
Name: NF8370_low_16
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8370_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 39311614 - 39311391
Alignment:
| Q |
16 |
catagagttgaggaataagtccgcgagcgaacatttgaccttgtgcagcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaata |
115 |
Q |
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| T |
39311614 |
catagagttgaggaataagtccgcgagcgaacatttgaccttgtgcagcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaata |
39311515 |
T |
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| Q |
116 |
gagaaatgtgagagtcactgctgcaccaaaatgtaagatgatttctctctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtcca |
215 |
Q |
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| T |
39311514 |
gagaaatgtgagagtcactgctgcaccaaaatgtaagatgatttctctctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtcca |
39311415 |
T |
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| Q |
216 |
cacacagtttgcactgcacttgtc |
239 |
Q |
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| T |
39311414 |
cacacagtttgcactgcacttgtc |
39311391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 39316089 - 39315870
Alignment:
| Q |
18 |
tagagttgaggaataagtccgcgagcgaacatttgaccttgtgcagcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaataga |
117 |
Q |
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|||||||| ||||||||||| |||||||||| ||||||||| | || |||||||||||||| || ||| |||||||||||||||||||||||||||||| |
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| T |
39316089 |
tagagttgcggaataagtccacgagcgaacacttgaccttgcacggctatgctctctgtctgtcctatgacttttagaaaatctccagagaaccaataga |
39315990 |
T |
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| Q |
118 |
gaaatgtgagagtcactgctgcaccaaaatgtaagatgatttctctctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtccaca |
217 |
Q |
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| T |
39315989 |
gaaatgtgagaatcactgctgcaccaaaatgtaagatgattgctctctgcaatgttatgcacattgctgcatgctttttggctccataagcttgtccaca |
39315890 |
T |
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| Q |
218 |
cacagtttgcactgcacttg |
237 |
Q |
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| T |
39315889 |
cacagtttgcactgcacttg |
39315870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 38137047 - 38137268
Alignment:
| Q |
16 |
catagagttgaggaataagtccgcgagcgaacatttgaccttgtgcagcaatgctctctgtctgccccatggcttttagaaaatctccagagaaccaata |
115 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||| | | |||||||| ||||| || ||| |||||||||||||||| ||||||||||| |
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| T |
38137047 |
catagagttgaggaataagtccatgagcgaacacttgaccttgcacggttatgctctccgtctgtcctatgacttttagaaaatctccggagaaccaata |
38137146 |
T |
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| Q |
116 |
gagaaatgtgagagtcactgctgcaccaaaatgtaagatgatttctctctgcaatgtgatgcacattgctgcatgttttttggctccataagcttgtcca |
215 |
Q |
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||||||||| ||| | ||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38137147 |
gagaaatgttagaatgactgctgcaccaaaatgtaagatgaatgctctttgcaaagtgatgcacattgctgcatgttttttggctccataagcttgtcca |
38137246 |
T |
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| Q |
216 |
cacacagtttgcactgcacttg |
237 |
Q |
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|| ||| ||||||||||||||| |
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| T |
38137247 |
catacattttgcactgcacttg |
38137268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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