View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8370_low_17 (Length: 281)

Name: NF8370_low_17
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8370_low_17
NF8370_low_17
[»] chr1 (15 HSPs)
chr1 (18-281)||(38137880-38138143)
chr1 (32-281)||(43044997-43045245)
chr1 (18-249)||(45983726-45983953)
chr1 (32-281)||(40034726-40034976)
chr1 (159-281)||(7891113-7891235)
chr1 (157-281)||(3300731-3300855)
chr1 (145-281)||(43083841-43083978)
chr1 (157-281)||(43066870-43066994)
chr1 (159-249)||(7888848-7888938)
chr1 (154-210)||(50912450-50912506)
chr1 (32-140)||(43045588-43045698)
chr1 (18-83)||(45993512-45993577)
chr1 (55-112)||(51291793-51291850)
chr1 (32-140)||(43066709-43066819)
chr1 (32-140)||(43084016-43084126)
[»] chr8 (5 HSPs)
chr8 (45-280)||(4297480-4297714)
chr8 (45-232)||(4619735-4619922)
chr8 (159-281)||(1846486-1846608)
chr8 (171-280)||(4787583-4787692)
chr8 (45-80)||(4787507-4787542)
[»] chr2 (6 HSPs)
chr2 (18-281)||(34690843-34691092)
chr2 (18-281)||(34713255-34713504)
chr2 (109-281)||(16232184-16232355)
chr2 (32-83)||(16232370-16232421)
chr2 (240-281)||(33860838-33860879)
chr2 (32-80)||(33861039-33861087)
[»] chr4 (2 HSPs)
chr4 (157-281)||(4231462-4231586)
chr4 (32-74)||(4231676-4231718)
[»] chr5 (1 HSPs)
chr5 (45-103)||(16349319-16349377)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 38137880 - 38138143
Alignment:
Q  18 cttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattttcatcctgtttgaagttgtatttcattgtttttatat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38137880 cttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattttcatcctgtttgaagttgtatttcattgtttttatat 38137979  T
Q  118 ttcatttgtataagtactaattgtgtgctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38137980 ttcatttgtataagtactaattgtgtgctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaa 38138079  T
Q  218 ttttcaccctttttgattgatgttggctataacctagatgaaattccatttgttcccatctctg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38138080 ttttcaccctttttgattgatgttggctataacctagatgaaattccatttgttcccatctctg 38138143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 281
Target Start/End: Complemental strand, 43045245 - 43044997
Alignment:
Q  32 tcttggtgtgcgccaaatgatctgctgctgcaacaaggtattt-atattttcatcctgtttgaagttg--tatttcattgtttttatatttcatttgtat 128  Q
    ||||||||||   |||||||||||||| ||||||||||||||| ||||||||| ||   |||||||||  ||||| ||| |||||||| ||||||| | |    
T  43045245 tcttggtgtgaagcaaatgatctgctgttgcaacaaggtatttaatattttcagcc-ccttgaagttgtatatttgattatttttataattcatttattt 43045147  T
Q  129 aagtactaattgtgtgctatctatattg-acagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccct 227  Q
    |||||||||||   ||| |||||| ||| |||||||||||| ||||||||||| |||||||||| ||| ||||| ||||||||||||||| ||||| |||    
T  43045146 aagtactaatt---tgc-atctatcttgaacagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcct 43045051  T
Q  228 ttttgattgatgttggctataacctagatgaaattccatttgttcccatctctg 281  Q
     |||||   | ||||||||||||| |||  ||||||||||||||||||||||||    
T  43045050 atttgaagaaggttggctataacccagacaaaattccatttgttcccatctctg 43044997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 45983726 - 45983953
Alignment:
Q  18 cttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattttcatcctgtttgaagttgtatttcattgtttttatat 117  Q
    |||||||| |||  ||||||||||   ||||||||||||||||||||||||||||||||||||||  ||  ||| |  |||||||| ||| ||||||||     
T  45983726 cttcttgccttcactcttggtgtgaatcaaatgatctgctgctgcaacaaggtatttatattttccgcccctttaagattgtatttgattatttttataa 45983825  T
Q  118 ttcatttgtataagtactaattgtgtgctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaa 217  Q
    ||||||| |||||||||||||| |     |||||    |||||||||||||||||||||| |||||||| | ||||||||||| ||||||||||| | ||    
T  45983826 ttcatttatataagtactaattat----catctaccccgacagatggatgccactacacctaaatactctagggataggtatgtagaaattgtgaggcaa 45983921  T
Q  218 ttttcaccctttttgattgatgttggctataa 249  Q
     ||| ||||| ||||| | | |||||||||||    
T  45983922 gttttaccctgtttgaataaggttggctataa 45983953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 281
Target Start/End: Original strand, 40034726 - 40034976
Alignment:
Q  32 tcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattttcatcctgtttgaagttgtatttcattgtttttatat----ttcatttgta 127  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||| || ||  ||| |||||||||||  || ||||||| |    ||||||| ||    
T  40034726 tcttggtgtgaatcaaatgatctgctgctgcaacaaggtatttatatttccagcccctttaaagttgtatttgtttatttttatttatagttcatttata 40034825  T
Q  128 t-aagtactaattgtgtgctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccc 226  Q
    | ||||||||||| |     |||||| ||||||||||||||| ||||||||||||||||| |||| ||||| ||||||| |||||| | | || || |||    
T  40034826 ttaagtactaattatc----atctatcttgacagatggatgcaactacacccaaatactctaagggtaggtttgaagaacttgtgacgaatttctccccc 40034921  T
Q  227 tttttgattgatgttggctataacctagatgaaattccatttgttcccatctctg 281  Q
     |||||||  | |||||||||||||||  ||| ||||||||| ||||||| ||||    
T  40034922 cttttgatcaaggttggctataacctatctgacattccatttattcccatatctg 40034976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 159 - 281
Target Start/End: Original strand, 7891113 - 7891235
Alignment:
Q  159 agatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagatga 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||   || ||||||||||||||| ||| |||||||||||||||| | |    
T  7891113 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagtgaggttggctataacctaggtaa 7891212  T
Q  259 aattccatttgttcccatctctg 281  Q
    |||||| ||| | || |||||||    
T  7891213 aattccttttatccctatctctg 7891235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 3300855 - 3300731
Alignment:
Q  157 acagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagat 256  Q
    ||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||||| ||||| ||| |||||   | ||||||||||||| |||     
T  3300855 acagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagac 3300756  T
Q  257 gaaattccatttgttcccatctctg 281  Q
     ||||||||||||||||||||||||    
T  3300755 aaaattccatttgttcccatctctg 3300731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 281
Target Start/End: Complemental strand, 43083978 - 43083841
Alignment:
Q  145 ctatctatattga-cagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttgg 243  Q
    |||||||| |||| ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||||||||||||| ||||| ||| |||||   | |||||    
T  43083978 ctatctatcttgaacagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttgg 43083879  T
Q  244 ctataacctagatgaaattccatttgttcccatctctg 281  Q
    |||||||| |||  ||||||||||||||||||||||||    
T  43083878 ctataacccagacaaaattccatttgttcccatctctg 43083841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 281
Target Start/End: Original strand, 43066870 - 43066994
Alignment:
Q  157 acagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagat 256  Q
    |||||||||||| ||||||||||| |||||||||| ||| ||||| ||||||||||||||| ||||| ||| |||||   | ||||||||||||| |||     
T  43066870 acagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagac 43066969  T
Q  257 gaaattccatttgttcccatctctg 281  Q
     ||||||||||||||||||||||||    
T  43066970 aaaattccatttgttcccatctctg 43066994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 7888848 - 7888938
Alignment:
Q  159 agatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataa 249  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||  || |||||||||||||||  || |||||||||||    
T  7888848 agatggatgccactacacccatatactcctaggacaggtatgaagaaattgtgaatcaagtttcaccctttttgagagaggttggctataa 7888938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 50912506 - 50912450
Alignment:
Q  154 ttgacagatggatgccactacacccaaatactccaaggataggtatgaagaaattgt 210  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  50912506 ttgacagatggatgctactactcccaaatactccaagggtaggtatgaagaaattgt 50912450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 43045698 - 43045588
Alignment:
Q  32 tcttggtgtgcgccaaatgatctgctgctgcaacaaggtattt-atattttcatcctgtttgaagttg--tatttcattgtttttatatttcatttgtat 128  Q
    ||||||||||   |||||||||||||| ||||||||||||||| ||||||||| ||   |||||||||  ||||| ||| |||||||| ||||||| | |    
T  43045698 tcttggtgtgaagcaaatgatctgctgttgcaacaaggtatttaatattttcagcc-ccttgaagttgtatatttgattatttttataattcatttattt 43045600  T
Q  129 aagtactaattg 140  Q
    ||||||||||||    
T  43045599 aagtactaattg 43045588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 45993512 - 45993577
Alignment:
Q  18 cttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattttca 83  Q
    |||||||| |||  ||||||||||   ||||||||||| |||||||||||||||||| ||||||||    
T  45993512 cttcttgccttcactcttggtgtgaatcaaatgatctgttgctgcaacaaggtatttctattttca 45993577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 51291850 - 51291793
Alignment:
Q  55 gctgctgcaacaaggtatttatattttcatcctgtttgaagttgtatttcattgtttt 112  Q
    ||||||||||||||||||||||||||||| ||  ||| ||||||||||| ||| ||||    
T  51291850 gctgctgcaacaaggtatttatattttcagcccttttaaagttgtatttgattctttt 51291793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 43066709 - 43066819
Alignment:
Q  32 tcttggtgtgcgccaaatgatctgctgctgcaacaaggtattt-atattttcatcctgtttgaagttg--tatttcattgtttttatatttcatttgtat 128  Q
    ||||||||||   |||||||||||||| ||||||||||||||| ||||||||| ||   |||| ||||  ||||| ||| |||||||| ||||||| | |    
T  43066709 tcttggtgtgaagcaaatgatctgctgttgcaacaaggtatttaatattttcagcc-ccttgaggttgtatattttattatttttataattcatttattt 43066807  T
Q  129 aagtactaattg 140  Q
    ||||||||||||    
T  43066808 aagtactaattg 43066819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 43084126 - 43084016
Alignment:
Q  32 tcttggtgtgcgccaaatgatctgctgctgcaacaaggtattt-atattttcatcctgtttgaagttg--tatttcattgtttttatatttcatttgtat 128  Q
    ||||||||||   |||||||||||||| ||||||||||||||| ||||||||| ||   |||| ||||  ||||| ||| |||||||| ||||||| | |    
T  43084126 tcttggtgtgaagcaaatgatctgctgttgcaacaaggtatttaatattttcagcc-ccttgaggttgtatattttattatttttataattcatttattt 43084028  T
Q  129 aagtactaattg 140  Q
    ||||||||||||    
T  43084027 aagtactaattg 43084016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 280
Target Start/End: Complemental strand, 4297714 - 4297480
Alignment:
Q  45 caaatgatctgctgctgcaacaaggtatttatattttcatcctgtttgaagttgtatttcattgtttttatatttcatttgtataagtactaattgtgtg 144  Q
    ||||| |||||||||||||||||||||||| |||||| | || |||| |  |||||||| ||| |||||||| ||||||||||||| |||||||| |       
T  4297714 caaattatctgctgctgcaacaaggtatttgtatttttagcccgtttaagattgtatttgattatttttataattcatttgtataaatactaattatcat 4297615  T
Q  145 ctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggc 244  Q
    | |||||| || |||||||||||||||||||||||||||||||| ||||||||||| | ||||     || || ||| | ||| ||||||  | ||||||    
T  4297614 c-atctatcttcacagatggatgccactacacccaaatactccatggataggtatgtaaaaatatcagagcaagttttaacctatttgatcaaggttggc 4297516  T
Q  245 tataacctagatgaaattccatttgttcccatctct 280  Q
    ||||| | | |||||||||||||| |||||||||||    
T  4297515 tataagccatatgaaattccatttattcccatctct 4297480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 232
Target Start/End: Complemental strand, 4619922 - 4619735
Alignment:
Q  45 caaatgatctgctgctgcaacaaggtatttatattttcatcctgtttgaagttgtatttca----ttgtttttatatttcatttgtataagtactaattg 140  Q
    |||||||||||||||| |||||||||||||||||||||| ||  ||  ||||||||||| |    || |||||||  ||||||| ||||| ||||||||     
T  4619922 caaatgatctgctgctacaacaaggtatttatattttcagccccttcaaagttgtattttaattattatttttattattcatttatataattactaattt 4619823  T
Q  141 tgtgctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttg 232  Q
    |     |||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |  ||||||| |||||||    
T  4619822 tc----atctatcttgatagatggatgccactgcacccaaatactccaagtataggtatgaagaatttgtgaaaggtttttcacactttttg 4619735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 281
Target Start/End: Complemental strand, 1846608 - 1846486
Alignment:
Q  159 agatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagatga 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||  || ||||||||||||| || | |    
T  1846608 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 1846509  T
Q  259 aattccatttgttcccatctctg 281  Q
    |||||| ||| | || |||||||    
T  1846508 aattccttttatccctatctctg 1846486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 4787583 - 4787692
Alignment:
Q  171 ctacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagatgaaattccatttgt 270  Q
    |||||||||||||||||| || |||||||  ||||||   |||| || ||| ||| ||||||||  | ||||||||||||| | ||||||||||||||||    
T  4787583 ctacacccaaatactccacggttaggtatttagaaatatcgaagcaagttttaccatttttgatcaaggttggctataacccaaatgaaattccatttgt 4787682  T
Q  271 tcccatctct 280  Q
    ||||||||||    
T  4787683 tcccatctct 4787692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 4787507 - 4787542
Alignment:
Q  45 caaatgatctgctgctgcaacaaggtatttatattt 80  Q
    ||||||||||||||||||||||||||||||||||||    
T  4787507 caaatgatctgctgctgcaacaaggtatttatattt 4787542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 34691092 - 34690843
Alignment:
Q  18 cttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattttcatcctgtttgaagttgtatttcattgtttttatat 117  Q
    |||||||| |||  |||||||||| | |||||||||||||||||||||||||||||||||||||         | |    | |||| ||| ||||||||     
T  34691092 cttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaaggtatttatatttt---------tca----gcatttgattatttttataa 34691006  T
Q  118 ttcatttgtataagtactaattgtgtgctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaa 217  Q
    ||||||| |||||||| ||||| |   | |||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||| |    
T  34691005 ttcatttatataagtattaattattaac-atctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaaggga 34690907  T
Q  218 ttttcaccctttttgattgatg-ttggctataacctagatgaaattccatttgttcccatctctg 281  Q
     ||||||||  ||||| ||| | |||| ||||||  |||| ||||||||||||||||||||||||    
T  34690906 atttcacccgctttga-tgaggattggttataacacagataaaattccatttgttcccatctctg 34690843  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 34713504 - 34713255
Alignment:
Q  18 cttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattttcatcctgtttgaagttgtatttcattgtttttatat 117  Q
    |||||||| |||  |||||||||| | |||||||||||||||||||||||||||||||||||||         | |    | |||| ||| ||||||||     
T  34713504 cttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaaggtatttatatttt---------tca----gcatttgattatttttataa 34713418  T
Q  118 ttcatttgtataagtactaattgtgtgctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaa 217  Q
    ||||||| |||||||| ||||| |   | |||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||| |    
T  34713417 ttcatttatataagtattaattattaac-atctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaaggga 34713319  T
Q  218 ttttcaccctttttgattgatg-ttggctataacctagatgaaattccatttgttcccatctctg 281  Q
     ||||||||  ||||| ||| | |||| ||||||  |||| ||||||||||||||||||||||||    
T  34713318 atttcacccgctttga-tgaggattggttataacacagataaaattccatttgttcccatctctg 34713255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 281
Target Start/End: Complemental strand, 16232355 - 16232184
Alignment:
Q  109 tttttatatttcatttgtataagtactaattgtgtgctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaatt 208  Q
    |||||||| ||||||| |||||||| ||||| |   | |||||| || ||||||| ||||||||||||| |||||||||||||| || ||||||| ||||    
T  16232355 tttttataattcatttatataagtaataattattaac-atctatcttcacagatgaatgccactacaccgaaatactccaaggacagatatgaagtaatt 16232257  T
Q  209 gtgaaggaattttcaccctttttgattgatg-ttggctataacctagatgaaattccatttgttcccatctctg 281  Q
    ||||||| | ||||||||  |||||  || | |||| ||||||   ||||| ||||||||||||||||||||||    
T  16232256 gtgaagggagtttcacccgctttga-cgaggattggttataacgctgatgatattccatttgttcccatctctg 16232184  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 16232421 - 16232370
Alignment:
Q  32 tcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattttca 83  Q
    |||||||||| | ||||||||||||||||||||||||||||| | |||||||    
T  16232421 tcttggtgtgaggcaaatgatctgctgctgcaacaaggtattgacattttca 16232370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 33860879 - 33860838
Alignment:
Q  240 ttggctataacctagatgaaattccatttgttcccatctctg 281  Q
    ||||||||||||||||  || |||||||||||||||||||||    
T  33860879 ttggctataacctagacaaagttccatttgttcccatctctg 33860838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 33861087 - 33861039
Alignment:
Q  32 tcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattt 80  Q
    |||||||||||  |||||||||||||||  ||||||||||||| |||||    
T  33861087 tcttggtgtgcctcaaatgatctgctgcatcaacaaggtatttctattt 33861039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 4231586 - 4231462
Alignment:
Q  157 acagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagat 256  Q
    ||||||||| |||||||| ||||| |||||||||   |||||||| ||||||||||||||| | ||| |||   |||   | ||||||||||||| ||||    
T  4231586 acagatggacgccactactcccaagtactccaagagcaggtatgatgaaattgtgaaggaagtatcatcctacatgaagaaggttggctataacccagat 4231487  T
Q  257 gaaattccatttgttcccatctctg 281  Q
     ||||||||||||||||||||||||    
T  4231486 aaaattccatttgttcccatctctg 4231462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 4231718 - 4231676
Alignment:
Q  32 tcttggtgtgcgccaaatgatctgctgctgcaacaaggtattt 74  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  4231718 tcttggtgtgaggcaaatgatctgctgctgcaacaaggtattt 4231676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 16349377 - 16349319
Alignment:
Q  45 caaatgatctgctgctgcaacaaggtatttatattttcatcctgtttgaagttgtattt 103  Q
    ||||||||||||||||||||||||||||| ||||||||| |   ||| |||||||||||    
T  16349377 caaatgatctgctgctgcaacaaggtattcatattttcagctcttttaaagttgtattt 16349319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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