View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8370_low_19 (Length: 279)
Name: NF8370_low_19
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8370_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 47564372 - 47564488
Alignment:
| Q |
145 |
ctaatatactactatcaaataatcttcaccagcttttttgttggcaatgttttccagatctcttatcacctctaggagaaagtaacccttcagtaacata |
244 |
Q |
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| T |
47564372 |
ctaatatactactatcaaataatcttcaccagcttttttgttggcaatgttttccagatctcttatcacctctaggagaaagtaacccttcagtaacata |
47564471 |
T |
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| Q |
245 |
atcctttttcttgatca |
261 |
Q |
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| T |
47564472 |
atcctttttcttgatca |
47564488 |
T |
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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 47564246 - 47564321
Alignment:
| Q |
19 |
gaattttcaatctatctcaggaacttcaccaagaaaacattgacatataatttacacaactcctattcccaaaccc |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47564246 |
gaattttcaatctatctcaggaacttcaccaagaaaacattgacatataatttacacaactcctattcccaaaccc |
47564321 |
T |
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