View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8370_low_28 (Length: 202)
Name: NF8370_low_28
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8370_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 50463289 - 50463474
Alignment:
| Q |
1 |
aaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatctttcacac |
100 |
Q |
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| T |
50463289 |
aaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatctttcacac |
50463388 |
T |
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| Q |
101 |
catgagactcaaccatctcttccattgatctcttaaaatcttcatatggatcctctgactccatagctaacacaacactttctttg |
186 |
Q |
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| T |
50463389 |
catgagactcaacaatctcttccattgatctcttaaaatcttcatatggatcctctgactccatagctaacacaacactttctttg |
50463474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25531027 - 25531099
Alignment:
| Q |
1 |
aaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagct |
73 |
Q |
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||||||| ||||||| ||| |||||| |||||||| |||| ||||||||| ||||||||||||||||||| |
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| T |
25531027 |
aaatcaaaaaaagcatcaataataaatccatgatttcttttctcattaacttcaaaataccaactcaaaagct |
25531099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 42929634 - 42929540
Alignment:
| Q |
1 |
aaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatcttt |
95 |
Q |
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|||||||||||||||||||||||| | |||||||| |||| |||| || ||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
42929634 |
aaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatcttt |
42929540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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