View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8370_low_3 (Length: 598)
Name: NF8370_low_3
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8370_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 22913080 - 22913665
Alignment:
| Q |
1 |
tcatgcacattttcccctatgtata----aaaatctttgttgtacatttaagttaaacacaatctatgttgatataatccagatttatccctattatttg |
96 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
22913080 |
tcatgcacattttcccctatgtatatataaaaatctttgttgtacatttaagttaaacacaatctatgttgatacaatccagatttatccctattacttg |
22913179 |
T |
|
| Q |
97 |
cacattttagtacatttgccaaattgtcatcaatccatagaaaaattggagatgttagcttttatggtacccgttttaggtatttgtgtttcgaaacaaa |
196 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22913180 |
cacatttcagtacatttgcaaaattgtcatcaatccataaacaaattggagatgttagcttttatggtacccgttttaggtatttgtgtttcgaaacaaa |
22913279 |
T |
|
| Q |
197 |
actggttgaaattcggagctacaacgacggtgaagatggagcaccctcatacggtgcttatcatggtgttagccggtcggagcatggaagttgaactgaa |
296 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22913280 |
actggttgaaatttggagctacaacgacggtgaagatggagcaccctcatgcggtgcttatcatggtgttagccggtcggagcatggaagttgcactgaa |
22913379 |
T |
|
| Q |
297 |
tttcccaaaaattctggagggttaatttgaaataggaaaagggtactaaatcatttttcataggggatgatcacactcatggattggattttcttgtatc |
396 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22913380 |
tttcccaaaaattatggagggttaatttgaaataggaaaagggtattaaatcatttttcataggggatgatcacactcatggattggattttcttgtatc |
22913479 |
T |
|
| Q |
397 |
ttcatgtgttattgtcgtcatattttaaagtctttcacagtatagcttcccttagctactgttacctttggtcaaatataagaaaataaattaatagatt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22913480 |
ttcatgtgttattgtcgtcatattttaaagtctttcccagtatagcttcccttagcaactgttacctttggtcaaatataagaaaagaaattaatagatt |
22913579 |
T |
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| Q |
497 |
tga--ttgaaatttaaaaagtctatgtatattgattgtgatcatgatagatata-ttttttacttattttgaaatcaacctagtatt |
580 |
Q |
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||| ||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22913580 |
tgattttgaaatttaaaaagtctatgtata-tgtatgtgatcatgatagatatatttttttacttattttgaaatcaacctagtatt |
22913665 |
T |
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