View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8370_low_4 (Length: 566)
Name: NF8370_low_4
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8370_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 47 - 550
Target Start/End: Original strand, 40198132 - 40198635
Alignment:
| Q |
47 |
gggaagggcttggagagtcatatgacggggacattgcatttataagttcccttgatagttttggaggaggccatactgatcctcatttcgttgcattggg |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40198132 |
gggaagggcttggagagtcatatgacggggacattgcatttataagttcccttgatagttttggaggaggccatactgatcctcatttcgttgcattggg |
40198231 |
T |
|
| Q |
147 |
aggtaagccatataatccgtttaattaaacattatcttttctcttcattttaatatattttgttttcactactcccaggacctgtaatgaacaaatttac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40198232 |
aggtaagccatataatccgtttaattaaacattatcctttctcttcattttaatatattttgttttcactactcccaggacctgtaatgaacaaatttac |
40198331 |
T |
|
| Q |
247 |
cattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaatcattatctattcaagttttatttctcaattgatattgctatgctga |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
40198332 |
cattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaatcattatctattgaacttttatttctcaattgatattgctatgctga |
40198431 |
T |
|
| Q |
347 |
ctgtacttaatatggcttcttaggtagaccacatgattgatgaccgcctattacaaattgtcaatgttgacatcaatgaagtcaaggtatgcttttatat |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40198432 |
ctgtacttaatatggcttcttaggtagaccacatgattgatgaccgcctattacaaattgtcaatgttgacatcaatgaagtcaaggtatgcttttagat |
40198531 |
T |
|
| Q |
447 |
ggtttatactttgcggtgtttgttcttatacattaagcctatggaatgttaaggtttcatactttatatggcctagctccaatagattcgactctcaagt |
546 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
40198532 |
ggtttatactttgctgtgtttgttcgtatacattaagcctatggaatgttaaggtttcatactttatatggcctagctccaatatattcgattctcaagt |
40198631 |
T |
|
| Q |
547 |
ggtt |
550 |
Q |
| |
|
|||| |
|
|
| T |
40198632 |
ggtt |
40198635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 45083905 - 45083984
Alignment:
| Q |
221 |
ccaggacctgtaatgaacaaatttaccattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaat |
300 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
45083905 |
ccaggacctgtaatggccaaattctctattgctttgagagaaatcagtacacacaaggaacttcttcgttcacaggtaat |
45083984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 45083679 - 45083762
Alignment:
| Q |
47 |
gggaagggcttggagagtcatatgacggggacattgcatttataagttcccttgatagttttggaggaggccatactgatcctc |
130 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||||||| || | ||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
45083679 |
gggaagggcttggagaggcatatgatggagacattgcatttgcaactgcccttgaaaattttggaggaggccatagtgatcctc |
45083762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University