View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8370_low_7 (Length: 437)
Name: NF8370_low_7
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8370_low_7 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 7005573 - 7005155
Alignment:
| Q |
18 |
aatttatacaaaccactcgactaacaaaggtgtctttcaactaagggtaaaaccgtgagcgcttacacaagacccaaagtgaaaaatacctacggaaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7005573 |
aatttatacaaaccactcgactaacaaaggtgtctttcaactaagggtgaaaccgtgagcgcttacacaagacccaaagtgaaaaatacctacggaaaat |
7005474 |
T |
|
| Q |
118 |
ggtgcaatagacttgagtttcaaccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaagactacatagatatggtgacaacacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7005473 |
ggtgcaatagacttgagtttcaaccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaaga-tacatagatatggtgacaacacg |
7005375 |
T |
|
| Q |
218 |
agtctnnnnnnnnnnnncgctacattaaaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagct |
317 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7005374 |
agtctaaaaagaaaaaacgctacattaaaagagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagct |
7005275 |
T |
|
| Q |
318 |
accaaatatatcatactcaaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgatattgat |
417 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7005274 |
accaaatatatcatactcaaaatcattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgatattgat |
7005175 |
T |
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| Q |
418 |
aatgtaacatagaataagtt |
437 |
Q |
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| T |
7005174 |
aatgtaacatagaataagtt |
7005155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 7015365 - 7014966
Alignment:
| Q |
18 |
aatttatacaaaccactcgactaacaaaggtgtctttcaactaagggtaaaaccgtgagcgcttacacaagacccaaagtgaaaaatacctacggaaaat |
117 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||| || || | |
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| T |
7015365 |
aatttatacaaaccactcaactaacaaaggcgtctttcaactaagggtgaagccgtgagggcttacacaagacccagagtgaaaaatacctccg-aatac |
7015267 |
T |
|
| Q |
118 |
ggtgcaatagacttgagtttcaaccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaagactacatagatatggtgacaacacg |
217 |
Q |
| |
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|||||||| ||| |||||||| |||||||||||||||||||| |||||||| || || ||||||||||||||||||||||| | |||||||||||||||| |
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| T |
7015266 |
ggtgcaatggacatgagtttcgaccaccttctaaagcaaaatgctcacttttgatgagcttaatccaagaaaaagactacaaacatatggtgacaacacg |
7015167 |
T |
|
| Q |
218 |
agtctnnnnnnnnnnnncgctacattaaaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagct |
317 |
Q |
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|| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7015166 |
agcctaaaaagaaaaaacgctacattaaaagagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaacgct |
7015067 |
T |
|
| Q |
318 |
accaaatatatcatactcaaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgatattgat |
417 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
7015066 |
accaaatatatcatactcaaaatcattcatgtaacaacgttcccatttccctatggttccctgcagtactcaaagctatgtacattaatatgatattgat |
7014967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 113 - 418
Target Start/End: Complemental strand, 6995857 - 6995552
Alignment:
| Q |
113 |
aaaatggtgcaatagacttgagtttcaaccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaagactacatagatatggtgaca |
212 |
Q |
| |
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|||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||| |
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| T |
6995857 |
aaaacggtgcaatagacttgagttccagccaccttctaaagcaaaatgctcactttagatgagcttaatccaagaaaaacactacatagatatggtgaca |
6995758 |
T |
|
| Q |
213 |
acacgagtctnnnnnnnnnnnncgctacattaaaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactca |
312 |
Q |
| |
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|||||||||| | ||||||||||| | ||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
6995757 |
acacgagtctaaaaagaaaaaactctacattaaaatagaaaatattcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactca |
6995658 |
T |
|
| Q |
313 |
aagctaccaaatatatcatactcaaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgata |
412 |
Q |
| |
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|||||||||| || |||| |||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |
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| T |
6995657 |
aagctaccaaggatctcattctcaaaatcattagagtaacaacgttcccatttccctatggttccctgcaatgctcaaagctatgtacgttaatatgata |
6995558 |
T |
|
| Q |
413 |
ttgata |
418 |
Q |
| |
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|||||| |
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| T |
6995557 |
ttgata |
6995552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 237 - 418
Target Start/End: Complemental strand, 7041219 - 7041037
Alignment:
| Q |
237 |
ctacatta-aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactc |
335 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| |
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| T |
7041219 |
ctacattataaagagaaaatattcacctgtatatcaaagagcgatatccttttttgcttagatttgcatgaaactcaacgctactaaagatctcacgctc |
7041120 |
T |
|
| Q |
336 |
aaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgatattgata |
418 |
Q |
| |
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| T |
7041119 |
aaaatcagtagtgtaacatcgttcccatttccctatgcttccctgtatggctcaaagatatgtacatcaatatgatattgata |
7041037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 251 - 418
Target Start/End: Complemental strand, 7028756 - 7028590
Alignment:
| Q |
251 |
aaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaattattcatgta |
350 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||| || ||| |||||||| | | |||| |
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| T |
7028756 |
aaaatcttcacctgtatatcaaagagcggtatccttttttgcttagattcacatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgta |
7028657 |
T |
|
| Q |
351 |
acaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgatattgata |
418 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |||| || || ||||||||||||||||||||||||| |
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|
| T |
7028656 |
acatcgttcccatttccctatgcttccctgtagggctc-aatctatgtacattaatatgatattgata |
7028590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 237 - 403
Target Start/End: Complemental strand, 7057177 - 7057010
Alignment:
| Q |
237 |
ctacatta-aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactc |
335 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| |
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| T |
7057177 |
ctacattagaaagagaaaatcttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacgctactaaaaatctcacgctc |
7057078 |
T |
|
| Q |
336 |
aaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacatt |
403 |
Q |
| |
|
||||| | | |||||| ||||||||||| |||||||| ||||||| |||| ||| |||||||||| |
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|
| T |
7057077 |
aaaatcagtacggtaacatcgttcccattttcctatggtaccctgcatggattaaagctatgtacatt |
7057010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 391
Target Start/End: Complemental strand, 7048338 - 7048183
Alignment:
| Q |
237 |
ctacatta-aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactc |
335 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||| || ||| || |
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| T |
7048338 |
ctacattagaaagagaaaatcttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacggtactaaagatctcacgctt |
7048239 |
T |
|
| Q |
336 |
aaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaa |
391 |
Q |
| |
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||||| | | ||||||| ||||||||| | |||||||| ||||||| |||||||| |
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|
| T |
7048238 |
aaaatcagtagtgtaacatcgttcccatgttcctatggtaccctgcatggatcaaa |
7048183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 7022025 - 7021891
Alignment:
| Q |
245 |
aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaattatt |
344 |
Q |
| |
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||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||| || || | |||||||| | | |
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| T |
7022025 |
aaagagaaaaacttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacgctgctaaagatctccttctcaaaatcagt |
7021926 |
T |
|
| Q |
345 |
catgtaacaacgttcccatttccctatggttccct |
379 |
Q |
| |
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|||||||||| | |||||| |||| |||||||| |
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| T |
7021925 |
attgtaacaacgataccattttcctacggttccct |
7021891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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