View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8370_low_8 (Length: 431)
Name: NF8370_low_8
Description: NF8370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8370_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 41833300 - 41832888
Alignment:
| Q |
1 |
gagtccaaggaccaaagttggagccaaagaaggtccatcatctggcatcaaactcttcaaaatgttggagttggacttgtttccaaatacccaataccca |
100 |
Q |
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| T |
41833300 |
gagtccaaggacccaagttggagccaaagaaggtccatcatctggcatcaaactcttcaaaatgttggagttggacttgtttccaaatacccaataccca |
41833201 |
T |
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| Q |
101 |
gaaactgcagcagagtagaatgtcaccaaaattacagcataacacatagtaaggccttttatcatctttccagttgcaggaggtgctagagttgcctata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41833200 |
gaaactgcagcagagtagaatgtcaccaaaattacagcataacacatagtaaggccttttatcatctttccagttgcaggaggtgctagagttgcctata |
41833101 |
T |
|
| Q |
201 |
caattaatacataatgacatggttaatctaattttaagaagcaacatatttgtctagtaattatttcaatttagaaagaggacaaaatggttacttgtat |
300 |
Q |
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| T |
41833100 |
caattaatacataatgacatggttaatctaattttaagaagcaacatatttgtctagtaattatttcaatttagaaagaggacaaaatggttacttgtat |
41833001 |
T |
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| Q |
301 |
ctcaggtaatatgccattcccaaaaattgctgcaattatggaaatggcagtgaaggcactgaagacccttgaggattccttaggctccaaggaatagtcc |
400 |
Q |
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| T |
41833000 |
ctcaggtaatatgccattcccaaaaattgctgcaattatggaaatggcagtgaaggcactgaagacccttgaggattccttaggttccaaggaatagtcc |
41832901 |
T |
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| Q |
401 |
cttggtggggcat |
413 |
Q |
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| T |
41832900 |
cttggtggggcat |
41832888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 41839487 - 41839075
Alignment:
| Q |
1 |
gagtccaaggaccaaagttggagccaaagaaggtccatcatctggcatcaaactcttcaaaatgttggagttggacttgtttccaaatacccaataccca |
100 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41839487 |
gagtccaaggacccaagttggagccaaagaaggtccatcatctggcatcaaactcttcaaaatgttggagttggacttgtttccaaatacccaataccca |
41839388 |
T |
|
| Q |
101 |
gaaactgcagcagagtagaatgtcaccaaaattacagcataacacatagtaaggccttttatcatctttccagttgcaggaggtgctagagttgcctata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41839387 |
gaaactgcagcagagtagaatgtcaccaaaattacagcataacacatagtaaggccttttatcatctttccagttgcaggaggtgctagagttgcctata |
41839288 |
T |
|
| Q |
201 |
caattaatacataatgacatggttaatctaattttaagaagcaacatatttgtctagtaattatttcaatttagaaagaggacaaaatggttacttgtat |
300 |
Q |
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| T |
41839287 |
caattaatacataatgacatggttaatctaattttaagaagcaacatatttgtctagtaattatttcaatttagaaagaggacaaaatggttacttgtat |
41839188 |
T |
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| Q |
301 |
ctcaggtaatatgccattcccaaaaattgctgcaattatggaaatggcagtgaaggcactgaagacccttgaggattccttaggctccaaggaatagtcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41839187 |
ctcaggtaatatgccattcccaaaaattgctgcaattatggaaatggcagtgaaggcactgaagacccttgaggattccttaggttccaaggaatagtcc |
41839088 |
T |
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| Q |
401 |
cttggtggggcat |
413 |
Q |
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||||||||||||| |
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| T |
41839087 |
cttggtggggcat |
41839075 |
T |
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