View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8371_high_1 (Length: 551)
Name: NF8371_high_1
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 427821 - 427506
Alignment:
| Q |
18 |
cttatggcttgg-ctggcagcttaaaaatccaacctcataaagaacccaaaagctcaacaggttggtttttcaaatttacctttgaaaaacaaaaattga |
116 |
Q |
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| T |
427821 |
cttatggcttgggctggcagcttaaaaatccaacctcataaagaacccaaaagctcaacaggttggtttttcaaatttacctttgaaaaacaaaaatcga |
427722 |
T |
|
| Q |
117 |
aagttgaaatactgattttttatgatcgaattcttgctttattaaatcttgaattcaatgctattgtagtttagaactctttcaatttgagtatcattac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
427721 |
aagttgaaatactgattttttatgatcgaattcttgctttattaaatcttgaattcaatgctattgtagtttagaactctttcaatttgagtatcattac |
427622 |
T |
|
| Q |
217 |
catattctcttgttttgggactttgaagtaggtctccaagagaaagagagagagctaatgtacaatcttaaaaagtcccatgtagatttggcaaagaata |
316 |
Q |
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| T |
427621 |
catattctcttgttttgggactttgaagtaggtctccaagagaaagagagagagctaatgtacaatcttaaaaagtcccatgtagatttggcaaagaata |
427522 |
T |
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| Q |
317 |
atgatattccacataa |
332 |
Q |
| |
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|||||||||||||||| |
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| T |
427521 |
atgatattccacataa |
427506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 333 - 527
Target Start/End: Complemental strand, 426423 - 426229
Alignment:
| Q |
333 |
tgacgttgaaactaatactaatggatttgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgca |
432 |
Q |
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| T |
426423 |
tgacgttgaaactaatactaatggatttgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgca |
426324 |
T |
|
| Q |
433 |
aggaaacccactattaaatcaaagtggcatactttttgaaggtcatgtatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
527 |
Q |
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| T |
426323 |
aggaaacccactattaaatcaaagtggcatactttttgaaggtcatgcatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
426229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 360 - 527
Target Start/End: Complemental strand, 436922 - 436759
Alignment:
| Q |
360 |
tgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgcaaggaaacccactattaaatcaaagtgg |
459 |
Q |
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||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | |
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| T |
436922 |
tgggggaagagattagcgagatcttcaggtggatttcaggggttccataaattgtgcatttgcgtaaaatgcaaggaaatgcactattaaatcaaagcga |
436823 |
T |
|
| Q |
460 |
catactttttgaaggtcatgtatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
527 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
436822 |
catactttttgaaggtc----ataaagctttaatagagcaactactaggccatcacaaaataagtaat |
436759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 28 - 328
Target Start/End: Complemental strand, 15564380 - 15564089
Alignment:
| Q |
28 |
ggctggcagcttaaaaatccaacctcataaagaacccaaaagctcaacaggttggtttttcaaatttacctttgaaaaacaaaaattgaaagttgaaata |
127 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||| ||||||| | |||||| ||||||||||||| |
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| T |
15564380 |
ggctggcagcttaaaaatccaaccttataaagaacccaaaatctcatcaggttggtttttcaattttacttttgaaacagaaaaatcgaaagttgaaata |
15564281 |
T |
|
| Q |
128 |
ctgattttttatgatcgaattcttgctttattaaatcttgaattcaatgctattgtagtttagaactctttcaatttgagtatcattaccatattctctt |
227 |
Q |
| |
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||||||| ||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||| |||| |
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| T |
15564280 |
ctgatttcttatgatagaatttttgc-ttattaaatcttgaaatcaatgctattgtagtttagcac-ctttcaatttgagtatcattaccttattatctt |
15564183 |
T |
|
| Q |
228 |
gttttgggactttgaagtaggtctccaagagaaagagagagagctaatgtacaatcttaaaaagtcccatgtagatttggcaaagaataatgatattcca |
327 |
Q |
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|||||| ||||||||||||||| || ||||||||| ||||||||| |||||||||||||||| || |||||||||||||||| ||| ||||| |
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| T |
15564182 |
gttttgtcactttgaagtaggtcgcc-------agagagagaagtaatgtacattcttaaaaagtcccatatacatttggcaaagaataacgatgttcca |
15564090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 18393050 - 18393248
Alignment:
| Q |
27 |
tggctggcagcttaaaaatccaacctcataaagaacccaaaagctcaacaggttggtttttcaaatttacctttgaaaaacaaaaattgaaagttgaaat |
126 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||| |
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| T |
18393050 |
tggctgacagcttaaaaatccaacctcataaa-aacccaaaatctcatcaggttggtttttcaatattacctttgaaagacaaaaattgaaagtttaaat |
18393148 |
T |
|
| Q |
127 |
actgattttttatgatcgaattcttgctttattaaatcttgaattcaatgctattgtagtttagaactctttcaatttgagtatcattaccatattctct |
226 |
Q |
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| |||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
18393149 |
attgattttttatgatagaatttttgctt-attaaatctagaattcaatgctattgtagtttagcactctttcaatttgagtatcattaccatattatct |
18393247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 333 - 527
Target Start/End: Complemental strand, 15563081 - 15562891
Alignment:
| Q |
333 |
tgacgttgaaactaatactaatggatttgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgca |
432 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| |||||| |||| ||||| | ||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
15563081 |
tgacgttgaagctaatactaatggatttggaggaaaggattagtgagatgtttagatggatttcacgggttccagaaattaggcatttgcgtaaaatgca |
15562982 |
T |
|
| Q |
433 |
aggaaacccactattaaatcaaagtggcatactttttgaaggtcatgtatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
527 |
Q |
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|||||| ||||| |||||||||| |||||||||| |||||||| |||||||||| | |||||||||||| |||||| ||||| || ||||| |
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| T |
15562981 |
aggaaatgcactactaaatcaaagcggcatactttctgaaggtc----atgcagctttcaaagagcaaccactgggccattacaaattaggtaat |
15562891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 355 - 527
Target Start/End: Original strand, 18394299 - 18394467
Alignment:
| Q |
355 |
ggatttgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgcaaggaaacccactattaaatcaa |
454 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||| |||||||||| ||||| |||||| ||||| ||||||||||||||||| ||||||||||| || |
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| T |
18394299 |
ggatttgggggaagagattaacgagatgtttaggtggatttcagggcttccagaaattggccattttcgtaaaatgcaaggaaattcactattaaatgaa |
18394398 |
T |
|
| Q |
455 |
agtggcatactttttgaaggtcatgtatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
527 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||| || ||||||||||||| || |||||||||||| |
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| T |
18394399 |
agtggcatattttctgaaggtc----atgcagctttaaaagtgcaaccactaggctgtcgtaaaataagtaat |
18394467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 15564035 - 15564078
Alignment:
| Q |
333 |
tgacgttgaaactaatactaatggatttgggggaagagattagc |
376 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
15564035 |
tgacgttacaactaatactactggatttgggggaagagattagc |
15564078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 18393274 - 18393327
Alignment:
| Q |
272 |
taatgtacaatcttaaaaagtcccatgtagatttggcaaagaataatgatattc |
325 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||||| ||||||||||| ||||| |
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|
| T |
18393274 |
taatgtacggtctcaaaaagtcccatatagatttggtaaagaataatggtattc |
18393327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 19350948 - 19350883
Alignment:
| Q |
337 |
gttgaaactaatactaatggatttgggggaagagattagcaagatctttaggtagatttcaggggtt |
403 |
Q |
| |
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|||||| ||||| |||||||||||||| |||||||||| |||| ||||||| ||||||||||||| |
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| T |
19350948 |
gttgaagctaatggtaatggatttgggg-aagagattagtgagatgtttaggtggatttcaggggtt |
19350883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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