View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8371_high_10 (Length: 245)
Name: NF8371_high_10
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 10323297 - 10323093
Alignment:
| Q |
21 |
atgactgaaaaattatttttattttacaatggagaatattttaaagaatagttaatttggtatctaaattatcactctccgttattttggtggctaaaat |
120 |
Q |
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| T |
10323297 |
atgactgaaaaattatttttattttacaatggagagtattttaaagaatagttaatttggtatctaaattatcactctccgttattttggtggctaaaat |
10323198 |
T |
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| Q |
121 |
atttatatcaactaaaagattctaactatgaaaagtacattaatttagttcctagaatattatgaaaaacaactaattttgttagctaatggatttagtt |
220 |
Q |
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| T |
10323197 |
atttatatcaactaaaagattctaactatgaaaagtacattaatttagttcctagaatattatgaaaaacaactaattttgttagctaatggatttagtt |
10323098 |
T |
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| Q |
221 |
gaatg |
225 |
Q |
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| T |
10323097 |
gaatg |
10323093 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 14198405 - 14198352
Alignment:
| Q |
151 |
aaaagtacattaatttagttcctagaatattatgaaaaacaactaattttgtta |
204 |
Q |
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| T |
14198405 |
aaaaatacattaatttagtttctaaactattatgaaaaacaatcaattttgtta |
14198352 |
T |
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