View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8371_high_14 (Length: 226)

Name: NF8371_high_14
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8371_high_14
NF8371_high_14
[»] chr3 (12 HSPs)
chr3 (11-225)||(22628610-22628819)
chr3 (12-116)||(22633336-22633440)
chr3 (31-96)||(22440621-22440686)
chr3 (12-98)||(22448593-22448681)
chr3 (11-87)||(22360942-22361018)
chr3 (168-223)||(22466033-22466088)
chr3 (32-128)||(22465855-22465954)
chr3 (2-69)||(22351766-22351832)
chr3 (31-96)||(22434556-22434624)
chr3 (168-226)||(22448767-22448824)
chr3 (31-116)||(22355616-22355706)
chr3 (53-90)||(22427397-22427434)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 22628610 - 22628819
Alignment:
Q  11 aaagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatcaatataaaacacaataatgcaacgattac 110  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  22628610 aaagtccacttgaagaaatgtgaatctcaaatccattgatgaccatcacctgcagttcacaccaaattatcaatatataagacaataatgcaacgattac 22628709  T
Q  111 acaatttaatataagaattgaaaacattagcccttctagtatttagaaccttgccataaaacgagtcatgtgtaaaattaaattgaataaataaaaatgt 210  Q
    ||||||||||||||| |||| ||| |||| || ||| ||  ||||||||||||||||    ||||| ||||||||||||||||||||||||||||||  |    
T  22628710 acaatttaatataaggattggaaa-attatcctttcgagggtttagaaccttgccat----cgagtaatgtgtaaaattaaattgaataaataaaaacat 22628804  T
Q  211 attcataagaaaagt 225  Q
    |||||||||||||||    
T  22628805 attcataagaaaagt 22628819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 22633336 - 22633440
Alignment:
Q  12 aagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatcaatataaaacacaataatgcaacgattaca 111  Q
    |||| ||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |    
T  22633336 aagttcacttgaagaaatgtgaatctcaaatccactgatggccatcacctgcagttcacaccaaattattaatataaaacacaataatgcaatgattaga 22633435  T
Q  112 caatt 116  Q
    |||||    
T  22633436 caatt 22633440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 22440621 - 22440686
Alignment:
Q  31 tgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatcaatataaaacacaat 96  Q
    |||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  22440621 tgaatctcaaatccacagatgaccatcacctgcagttcaatccaaattatcaatataaaacacaat 22440686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 22448593 - 22448681
Alignment:
Q  12 aagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatca--atataaaacacaataa 98  Q
    |||| ||||||||| ||  |||||||||||| || ||||| ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  22448593 aagttcacttgaagaaaagtgaatctcaaattcactgatggccatcacctgcagttcacaccaaattatcaatatataaaacacaataa 22448681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 22360942 - 22361018
Alignment:
Q  11 aaagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttcacaccaaattatcaatata 87  Q
    ||||||||||||||| ||| |||||||||||| || | ||| ||||||||| |||||||||||||||||| ||||||    
T  22360942 aaagtccacttgaagaaatgtgaatctcaaattcactaatggccatcacctacagttcacaccaaattattaatata 22361018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 22466033 - 22466088
Alignment:
Q  168 aaaacgagtcatgtgtaaaattaaattgaataaataaaaatgtattcataagaaaa 223  Q
    |||| |||| ||||| || |||||| ||||||||||||||||||||||||||||||    
T  22466033 aaaatgagtgatgtgcaacattaaactgaataaataaaaatgtattcataagaaaa 22466088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 22465855 - 22465954
Alignment:
Q  32 gaatctcaaatccagtgatgaccatcacctgc-agttcacacca--aatta-tcaatataaaacacaataatgcaacgattacacaatttaatataagaa 127  Q
    |||||||||||||| |||| |||||||||||| ||||||||| |  ||||| ||||||| ||||| ||||||| |||||||| ||| ||| |||||||||    
T  22465855 gaatctcaaatccactgataaccatcacctgcaagttcacacaaataattattcaatat-aaacaaaataatgaaacgattagacagtttcatataagaa 22465953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 22351766 - 22351832
Alignment:
Q  2 gctgataggaaagtccacttgaaggaatatgaatctcaaatccagtgatgaccatcacctgcagttca 69  Q
    |||||||| ||||||||||||||  ||| |||||||||||| || ||||| | |||||||||||||||    
T  22351766 gctgatagaaaagtccacttgaaa-aatgtgaatctcaaattcactgatggcaatcacctgcagttca 22351832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 22434556 - 22434624
Alignment:
Q  31 tgaatctcaaatccagtgatga---ccatcacctgcagttcacaccaaattatcaatataaaacacaat 96  Q
    ||||||| ||||||| ||||||   | |||||||| ||||||||||||| ||||||||| |||||||||    
T  22434556 tgaatctgaaatccactgatgataactatcacctgtagttcacaccaaaatatcaatatgaaacacaat 22434624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 22448767 - 22448824
Alignment:
Q  168 aaaacgagtcatgtgtaaaattaaattgaataaataaaaatgtattcataagaaaagta 226  Q
    |||| |||| ||||||||||||||| | ||||||||||||  |||||||||||||||||    
T  22448767 aaaatgagtaatgtgtaaaattaaaat-aataaataaaaagttattcataagaaaagta 22448824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 22355616 - 22355706
Alignment:
Q  31 tgaatctcaaatccagtgatgaccatcacctgcagttcacacc-aaattatca----atataaaacacaataatgcaacgattacacaatt 116  Q
    |||||||||||||||  || |  |||||||||||||||||||| ||||||| |    |||||||||||||||||| || ||||| ||||||    
T  22355616 tgaatctcaaatccaccgacggtcatcacctgcagttcacaccaaaattattaatatatataaaacacaataatggaatgattagacaatt 22355706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 22427397 - 22427434
Alignment:
Q  53 ccatcacctgcagttcacaccaaattatcaatataaaa 90  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  22427397 ccatcacatgcggttcacaccaaattatcaatataaaa 22427434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University