View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8371_high_3 (Length: 435)
Name: NF8371_high_3
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 1787361 - 1786953
Alignment:
| Q |
12 |
acatcagtctattttctttgtatctatacaaactagatttactacgctcaacaaaagtacgcagtcacgcattcaggataatcttgatt---cgatcaag |
108 |
Q |
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| T |
1787361 |
acatcactctattttctttgtatctatacaaactagatttattacggtcaacaaaagtacgcagtcacgcattcaggataatcttgattgttcgatcaag |
1787262 |
T |
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| Q |
109 |
atgaccattcaattaagattagacgatttccgatatcagactatgtgaatgtgggttc-tcctaattgcaggaaccctagtcttgtgtggtcacaaacat |
207 |
Q |
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| T |
1787261 |
atgaccattcaatcaagatcagacgattcccaatatcagactacgtgaatgtgggttcctcctaattgcaggaaccctagtcttgtatggtcacaaacat |
1787162 |
T |
|
| Q |
208 |
ttagatacaccatttagtcacatatacaagtcttatgtggtcacaaacattttgatacatacaccatttaatcacaaatacatatttgaaaaagttataa |
307 |
Q |
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| T |
1787161 |
ttagatacatcatttagtcacatatacaagtcttatgtggtcacaaacattttgatacatacaccatttaatcacaaatacatatttgaaaaagttataa |
1787062 |
T |
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| Q |
308 |
aaaataaaagaattgaataaagtacannnnnnnaggaaagaaaaatatagttacacctaagtattttccgaatatattgtctttacatttttaattcaaa |
407 |
Q |
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| T |
1787061 |
aaaataaaagaattgaataaagtacatttttttaggaaagaaaaatatagttatacctaagtattttccgaatatattgtctttacatttttaattcaaa |
1786962 |
T |
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| Q |
408 |
ctaacttgg |
416 |
Q |
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| T |
1786961 |
ctaacttgg |
1786953 |
T |
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