View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8371_high_4 (Length: 407)
Name: NF8371_high_4
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 45450086 - 45450436
Alignment:
| Q |
13 |
ttctccaacacataattgatcaacccagtccatggtcaagtgaatctaaaaggctagatatttatcccatgctggaaaaatggaaattaaggaagatctt |
112 |
Q |
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| T |
45450086 |
ttctccaacacataattgatcaacccagtccatggtcatgtgaatctagaaggctagatatttatcccatgctggaaaaatggaaattacggaagatctt |
45450185 |
T |
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| Q |
113 |
ttctaaaataatagaactacagtacacggcatctctgatcacgacatttaaccaacaaatattcaatggtttaaaagtattttgtgaattgttcctttca |
212 |
Q |
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| T |
45450186 |
ttctaaaataatagaactacagtacacggcatctctgatcacgacatttaaccaacaaatattcaatggtttaaaagtattttgtgaattgttcctttca |
45450285 |
T |
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| Q |
213 |
gaaag----aagaaaagnnnnnnngtattattttgctcttaaatcgaagatatttatttgccctttgcaaatttgtgatgaaaattgggatcatcatata |
308 |
Q |
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| T |
45450286 |
gaaagaaaaaataaataaaaaaaagtactattttgctcttaaatcgaagatatttatttgccctttgcaaatttgtgatgaaaattgggatcatc----a |
45450381 |
T |
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| Q |
309 |
ttttggagcgcaaaaaagtaaacatgtcactacaatacaaggatgtccacttcca |
363 |
Q |
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| T |
45450382 |
ttttggagcgcaaaaaagtaaacatgtcactacaatacaaggatgtccacttcca |
45450436 |
T |
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