View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8371_high_5 (Length: 355)

Name: NF8371_high_5
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8371_high_5
NF8371_high_5
[»] chr4 (19 HSPs)
chr4 (28-351)||(3816608-3816930)
chr4 (2-355)||(3809003-3809351)
chr4 (239-355)||(3920530-3920646)
chr4 (45-351)||(3986022-3986329)
chr4 (239-355)||(4024454-4024570)
chr4 (2-349)||(3800570-3800920)
chr4 (233-355)||(3956274-3956396)
chr4 (233-353)||(4001522-4001642)
chr4 (2-98)||(3956520-3956616)
chr4 (239-351)||(3933758-3933867)
chr4 (233-355)||(4009212-4009334)
chr4 (45-103)||(3920775-3920833)
chr4 (45-103)||(3933996-3934054)
chr4 (45-98)||(4217653-4217706)
chr4 (2-103)||(4001276-4001377)
chr4 (239-353)||(3964055-3964166)
chr4 (233-345)||(4217856-4217968)
chr4 (44-103)||(4009034-4009093)
chr4 (41-96)||(4024254-4024309)
[»] chr5 (2 HSPs)
chr5 (1-139)||(13396943-13397087)
chr5 (194-355)||(13397124-13397285)
[»] chr3 (1 HSPs)
chr3 (240-308)||(23454238-23454306)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 351
Target Start/End: Original strand, 3816608 - 3816930
Alignment:
28 aaaccgtctatatcacgaaaatacaaaaattt-caggttggtcatcttatcaaa-tacatgacggcttaactttagctccctcattgttggcaaacttat 125  Q
    ||||| |||||| ||| ||||||||||||    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
3816608 aaaccttctataccaccaaaatacaaaaaaccgcaggttggtcatcttatcaaaatacatgacggcttaacttcagctccctcattgttggcaaacttat 3816707  T
126 gcttctaatagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaa 225  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
3816708 gcttctaatagcattggtaccctgcaatcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaatcgacatgacaaatattaatctaa 3816807  T
226 aaatgacatattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttgg 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||   || |||||||||||     
3816808 aaatgacatattttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgttttccaagg---tcactagattcttgc 3816904  T
326 cgaactacctcccgacccatttcttg 351  Q
    ||||| | ||||| ||||||||||||    
3816905 cgaacaatctcccaacccatttcttg 3816930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 355
Target Start/End: Original strand, 3809003 - 3809351
Alignment:
2 attgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttag 101  Q
    |||||| || ||||||||||| ||  ||||  |||||||||| |||||||||||||   || ||||||||||||||||||||| || |||||||||  ||    
3809003 attgaaacctttgaggaagacaattgaaactatctatatcaccaaaatacaaaaatcgaagtttggtcatcttatcaaatacacgagggcttaactcgag 3809102  T
102 ctccctcattgttggcaaacttatgcttctaatagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaa 201  Q
    || |||||||||| ||| |||||||||||| |||| ||  ||| ||||   ||||||||||||||||||||||||||||||||||||||||| |||||||    
3809103 cttcctcattgttcgcagacttatgcttcttatagaatcagtaccctg---tcatgaaagtaaaataaaacattaaaatctttgaaaggcacctttttaa 3809199  T
202 ccaacatgacaaatattaatctaaaaatgacatattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttt 301  Q
    | |||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
3809200 c-aacatgacaaatgtta-tctaaaaatgacatactttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgtttt 3809297  T
302 tcagggtgttctctagattcttggcgaactacctcccgacccatttcttgtaga 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3809298 tcagggtgttctctagattcttggcgaactacctcccgacccatttcttgtaga 3809351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 3920646 - 3920530
Alignment:
239 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 338  Q
    ||||||||||||||||||||||||||| |||| |||||   || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3920646 tttaccttgtcatttttcaatacatcacaaatgtcatcaacatcccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 3920547  T
339 gacccatttcttgtaga 355  Q
    |||||||||||||||||    
3920546 gacccatttcttgtaga 3920530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 45 - 351
Target Start/End: Original strand, 3986022 - 3986329
Alignment:
45 aaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaa------acttatgcttctaatagca 138  Q
    ||||| ||||||||||||||| ||||||||| ||||||||| | |||||||||| |||| ||| |||| || |||      || ||||||||||||||||    
3986022 aaaatccaaaaatttcaggttcgtcatcttagcaaatacatcagggcttaacttcagcttcctaattgctgacaagtttagacatatgcttctaatagca 3986121  T
139 ttggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaaaaatgacatattt 238  Q
    |  ||| ||||   ||||||| | |||| ||||   |||| || ||||||| |||||||| |||||| || |||||| ||| | |||| |||  ||||||    
3986122 tcagtaccctg---tcatgaatggaaaagaaaattctaaa-tcattgaaagacacattttaaaccaaaataacaaatgtta-tgtaaagatgctatattt 3986216  T
239 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 338  Q
    | ||||||||||||||| || |||||  ||||||||||  ||| |||||||||||||||||| |  |||| ||| ||||||||||||||||| |||||||    
3986217 tataccttgtcattttttaagacatcgcaaatttcatcatgatcccataatcgactgcgtttgtttgggtattcactagattcttggcgaacaacctccc 3986316  T
339 gacccatttcttg 351  Q
    |||||||||||||    
3986317 gacccatttcttg 3986329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 4024454 - 4024570
Alignment:
239 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 338  Q
    |||||||||||||||| |||||||||| |||| |||||  ||| |||||||||||||||||||  ||||| | | ||||||||||||||||| |||||||    
4024454 tttaccttgtcattttccaatacatcacaaatgtcatcatgatcccataatcgactgcgttttctagggtctgcactagattcttggcgaacaacctccc 4024553  T
339 gacccatttcttgtaga 355  Q
    |||||||||||||||||    
4024554 gacccatttcttgtaga 4024570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 349
Target Start/End: Original strand, 3800570 - 3800920
Alignment:
2 attgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttag 101  Q
    |||||||||||||||||||| | |||||| ||| | || || |||||| |||| ||  || ||||||||||||| ||||||||||| |||||||||| ||    
3800570 attgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatccaaatatcgcaagttggtcatcttagcaaatacatgagggcttaacttcag 3800669  T
102 ctccctcattgttggcaa------acttatgcttctaatagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacat 195  Q
    || ||| | || || |||      || |||||||||||||||||  ||| ||| |   ||| || |||||| |||| |||  |||| ||||||| || ||    
3800670 cttcctaaatgatgacaagtctacacgtatgcttctaatagcatcagtaccctac---cattaacgtaaaagaaaa-atttcaatcattgaaagccatat 3800765  T
196 ttttaaccaacatgacaaatattaatctaaaaatgaca--tattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgac 293  Q
    |||||||||| || ||| || ||| ||| |||  | ||  |||||||||||||||||||||||||||||||||| ||   ||| |||| ||||||  |||    
3800766 ttttaaccaaaataacatatgtta-tctgaaatagccaaatattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgac 3800864  T
294 tgcgtttttcagggtgttctctagattcttggcgaactacctcccgacccatttct 349  Q
    ||| ||||  ||||| ||| ||| ||||||||||||| ||||||||||||||||||    
3800865 tgcattttctagggtcttcactatattcttggcgaacaacctcccgacccatttct 3800920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 3956396 - 3956274
Alignment:
233 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 332  Q
    ||||||||||||||||||||||||||||||||||| ||   ||| |||||  |||||||||||| ||||  ||||| ||| || |||||||||||||| |    
3956396 atattttttaccttgtcatttttcaatacatcatagataatatcaggattggataatcgactgcattttctagggtcttcactggattcttggcgaacaa 3956297  T
333 cctcccgacccatttcttgtaga 355  Q
    |||||||||||||||||||||||    
3956296 cctcccgacccatttcttgtaga 3956274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 4001522 - 4001642
Alignment:
233 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 332  Q
    |||||||||||||||||||||||||||||||   |||| ||||| |||| |||||| ||||| |||||   ||||| ||| ||||||||||||||||| |    
4001522 atattttttaccttgtcatttttcaatacatagcaaatgtcatcaggatcccataaccgacttcgtttactagggtcttcactagattcttggcgaacaa 4001621  T
333 cctcccgacccatttcttgta 353  Q
    |||||||||||||||||||||    
4001622 cctcccgacccatttcttgta 4001642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 3956616 - 3956520
Alignment:
2 attgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactt 98  Q
    |||||| ||||| ||||| |||||||||||| ||||| |||||||||| |||||| | ||||||||||||||||||||||||||   ||||||||||    
3956616 attgaatcccttcaggaatacgatccaaaccatctatgtcacgaaaatccaaaaactgcaggttggtcatcttatcaaatacattggggcttaactt 3956520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 3933867 - 3933758
Alignment:
239 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 338  Q
    ||||||||||||||||||||||||||| |||| |||||   || |||||||||||||| |||| || ||   || ||||||||||| ||||| |||||||    
3933867 tttaccttgtcatttttcaatacatcaaaaatgtcatcaacatcccataatcgactgcattttccaagg---tcactagattcttgccgaacaacctccc 3933771  T
339 gacccatttcttg 351  Q
     ||||||||||||    
3933770 aacccatttcttg 3933758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 355
Target Start/End: Original strand, 4009212 - 4009334
Alignment:
233 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 332  Q
    |||| |||||||||||| ||||||||||||||||| ||   ||| |||| ||||| | |||||| ||||  ||| | ||| ||||||||||  ||||| |    
4009212 atatattttaccttgtcgtttttcaatacatcatagataatatcaggatcccatagttgactgcattttataggatcttcactagattcttaacgaacaa 4009311  T
333 cctcccgacccatttcttgtaga 355  Q
    |||||||||||||||||||||||    
4009312 cctcccgacccatttcttgtaga 4009334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 3920833 - 3920775
Alignment:
45 aaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttagct 103  Q
    ||||| ||||||||  ||||||||||||||||||||||||||| |||||||||||||||    
3920833 aaaatccaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagct 3920775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 3934054 - 3933996
Alignment:
45 aaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttagct 103  Q
    ||||| ||||||||  ||||||||||||||||||||||||||| |||||||||||||||    
3934054 aaaattcaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagct 3933996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 4217653 - 4217706
Alignment:
45 aaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactt 98  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||    
4217653 aaaattcaaaaatttcaggttggtcatcttagcaaatacatgagggcttaactt 4217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 4001276 - 4001377
Alignment:
2 attgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttag 101  Q
    |||||||||||||||||||| | |||||| ||| | || ||   |||| |||| ||  |||||||||||||||| ||||||||||| |||||||||| ||    
4001276 attgaagcccttgaggaagaagttccaaatcgtatttaccaatgaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaacttcag 4001375  T
102 ct 103  Q
    ||    
4001376 ct 4001377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 3964166 - 3964055
Alignment:
239 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 338  Q
    ||||||||||||||||| ||||| |||||||| |||||   || |||||||||||| ||  || |||||| | | || |||||||||||||| | |||||    
3964166 tttaccttgtcattttttaatacttcataaatgtcatc---atcccataatcgactacggcttccagggtctccacttgattcttggcgaacaatctccc 3964070  T
339 gacccatttcttgta 353  Q
     |||||| |||||||    
3964069 tacccatgtcttgta 3964055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 345
Target Start/End: Original strand, 4217856 - 4217968
Alignment:
233 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 332  Q
    |||||||||||||||||||||| ||||||||   |||| ||||| |||| |||||| |||||  ||||   ||||| ||   |||||||| ||||||| |    
4217856 atattttttaccttgtcattttccaatacatagcaaatgtcatcaggatcccataaccgactttgtttactagggtctttaatagattctaggcgaacaa 4217955  T
333 cctcccgacccat 345  Q
    |||||||||||||    
4217956 cctcccgacccat 4217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 4009034 - 4009093
Alignment:
44 gaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttagct 103  Q
    |||||| |||||||  |||||||||||||||| ||||||||||| |||||||||| ||||    
4009034 gaaaatccaaaaatagcaggttggtcatcttagcaaatacatgagggcttaacttcagct 4009093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 4024254 - 4024309
Alignment:
41 cacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaac 96  Q
    ||||||||| |||||||| |||||||||||||||| ||||| |||||  |||||||    
4024254 cacgaaaatccaaaaattgcaggttggtcatcttagcaaatgcatgagagcttaac 4024309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 13396943 - 13397087
Alignment:
1 aattgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaacttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||||||||| |    
13396943 aattgaagcccttgaggaagacgatccaaaccgtctatatcatgaaaatacaaaaatttcaggttggtcatcttatcaaatacaggcgggcttaacttca 13397042  T
101 gctccctcattgttggcaa------acttatgcttctaatagcat 139  Q
    ||| ||| |||| || |||      ||||||||||||||||||||    
13397043 gcttcctaattgctgacaagtctacacttatgcttctaatagcat 13397087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 355
Target Start/End: Original strand, 13397124 - 13397285
Alignment:
194 atttttaaccaacatgacaaatattaatctaaaaatgacatatttt-ttaccttgtcatttttcaatacatcataaatttcatctggattccataatcga 292  Q
    |||||| ||||| ||||||||| ||| ||||||| || || ||||| ||||||||||||||||||||||||| || ||   ||| |||| ||||||||||    
13397124 attttttaccaaaatgacaaatgtta-tctaaaattgccaaatttttttaccttgtcatttttcaatacatcgtagataatatcaggatcccataatcga 13397222  T
293 ctgcgtttttcagggtgttctctagattcttggcgaactacctcccgacccatttcttgtaga 355  Q
    |||| ||||  ||||| ||| ||||||||||||||||| ||||| ||||||||||| ||||||    
13397223 ctgcattttctagggtcttcactagattcttggcgaacaacctcgcgacccatttcctgtaga 13397285  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 23454238 - 23454306
Alignment:
240 ttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggt 308  Q
    |||||||||  ||||||||||||||| | ||||| || | |||||| |||||||| |||||| ||||||    
23454238 ttaccttgttttttttcaatacatcagatatttcttcagcattccacaatcgacttcgttttccagggt 23454306  T

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