View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8371_low_1 (Length: 1121)

Name: NF8371_low_1
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8371_low_1
NF8371_low_1
[»] chr3 (5 HSPs)
chr3 (343-663)||(14861071-14861395)
chr3 (483-532)||(19614550-19614599)
chr3 (487-532)||(19631889-19631934)
chr3 (483-532)||(27052576-27052625)
chr3 (487-532)||(10934615-10934660)
[»] chr6 (5 HSPs)
chr6 (360-530)||(12463488-12463658)
chr6 (343-439)||(23299780-23299876)
chr6 (343-420)||(23224527-23224605)
chr6 (477-532)||(14566495-14566550)
chr6 (483-532)||(19977239-19977288)
[»] scaffold0093 (1 HSPs)
scaffold0093 (344-524)||(51965-52145)
[»] chr5 (5 HSPs)
chr5 (359-521)||(13457119-13457281)
chr5 (347-532)||(17364308-17364483)
chr5 (456-524)||(26868010-26868078)
chr5 (487-533)||(19859388-19859434)
chr5 (422-532)||(26727857-26727968)
[»] chr7 (5 HSPs)
chr7 (360-524)||(16094878-16095039)
chr7 (395-529)||(20148756-20148889)
chr7 (359-530)||(17161043-17161216)
chr7 (486-531)||(3170212-3170257)
chr7 (359-392)||(20148909-20148942)
[»] scaffold0111 (1 HSPs)
scaffold0111 (359-524)||(30050-30215)
[»] chr8 (8 HSPs)
chr8 (343-499)||(16228324-16228479)
chr8 (350-499)||(25263432-25263582)
chr8 (219-342)||(16598625-16598748)
chr8 (269-342)||(22511661-22511734)
chr8 (269-342)||(22518961-22519034)
chr8 (233-295)||(36889462-36889524)
chr8 (488-529)||(21695236-21695277)
chr8 (483-532)||(24625010-24625059)
[»] scaffold0417 (1 HSPs)
scaffold0417 (351-530)||(3753-3933)
[»] scaffold0186 (1 HSPs)
scaffold0186 (361-473)||(17771-17883)
[»] chr4 (6 HSPs)
chr4 (344-518)||(9199228-9199402)
chr4 (344-518)||(9252811-9252985)
chr4 (367-431)||(15692418-15692482)
chr4 (369-518)||(9270573-9270721)
chr4 (483-532)||(28800999-28801048)
chr4 (487-532)||(17960002-17960047)
[»] chr2 (2 HSPs)
chr2 (365-471)||(21909966-21910071)
chr2 (486-532)||(24282072-24282118)
[»] scaffold0240 (2 HSPs)
scaffold0240 (262-342)||(2018-2098)
scaffold0240 (269-336)||(15288-15355)
[»] scaffold0330 (1 HSPs)
scaffold0330 (262-342)||(18000-18080)
[»] scaffold0001 (1 HSPs)
scaffold0001 (465-529)||(155133-155197)
[»] scaffold0115 (1 HSPs)
scaffold0115 (422-530)||(36736-36844)
[»] scaffold0672 (1 HSPs)
scaffold0672 (425-532)||(6637-6743)
[»] chr1 (3 HSPs)
chr1 (483-529)||(21402745-21402791)
chr1 (485-532)||(21719824-21719871)
chr1 (477-533)||(21423406-21423462)
[»] scaffold0205 (1 HSPs)
scaffold0205 (487-532)||(1031-1076)
[»] scaffold0190 (1 HSPs)
scaffold0190 (483-532)||(1846-1895)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 343 - 663
Target Start/End: Original strand, 14861071 - 14861395
Alignment:
Q  343 gggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttca 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  14861071 gggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaagggggatagattccttttatcaattaagctataacttca 14861170  T
Q  443 tctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaaagtattgttt 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  14861171 tctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtggaattattgttt 14861270  T
Q  543 ggctaactttatagctctcatagtccctgatagctcaacatgtagagcattaccaactcttgtgttctccccaaaaca----aggaaatttgaatcatgg 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  14861271 ggctaactttatagctctcatagtccctgatagctcaacatgtagagcattaccaactcttgtgttctccccaaaacataagaggaaatttgaatcatgg 14861370  T
Q  639 tttctgaaaatacatccacaagcag 663  Q
    |||||||||||||||||||||||||    
T  14861371 tttctgaaaatacatccacaagcag 14861395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 19614599 - 19614550
Alignment:
Q  483 gactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    |||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  19614599 gactttttgtcatttttgatgatgaatttcgtgctcctaattcatgtgaa 19614550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 487 - 532
Target Start/End: Original strand, 19631889 - 19631934
Alignment:
Q  487 ttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||    
T  19631889 ttttgtgatttttgataatgaatttcgtgctcctaattcatgtgaa 19631934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 27052625 - 27052576
Alignment:
Q  483 gactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    ||||||||||| |||| ||||||||| ||||||||| |||||||||||||    
T  27052625 gactttttgtggttttgaatgatgaaattcgtgctcctaattcatgtgaa 27052576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 487 - 532
Target Start/End: Complemental strand, 10934660 - 10934615
Alignment:
Q  487 ttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    ||||||| |||| ||||||||| ||||||||| |||||||||||||    
T  10934660 ttttgtggttttgaatgatgaaattcgtgctcctaattcatgtgaa 10934615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 1e-62; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 360 - 530
Target Start/End: Original strand, 12463488 - 12463658
Alignment:
Q  360 gggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggt 459  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||| |||||||| |||||||||| ||||||||||    
T  12463488 gggagattgaagcttaagctagtggattcaagacctagaggtaagggggatagattcatttcatcaattgagctataacttcatcttttcaattatgggt 12463587  T
Q  460 cataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtg 530  Q
    |||||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||    
T  12463588 cataagcgattattgtgaattatgagtttttgtgatttttaatgatgaatatcgtgctcttaatttatgtg 12463658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 343 - 439
Target Start/End: Complemental strand, 23299876 - 23299780
Alignment:
Q  343 gggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatt 439  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||||||||||| || ||||||| |||||||||||| |||||||| |||||||||    
T  23299876 gggtttgaagagctagggagagatttaagcgtaagctagtggattcaagacctacaggtaagggggatagattcctttcatcaattaggctataatt 23299780  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 23224527 - 23224605
Alignment:
Q  343 gggtttgaagagctaggggg-agattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttt 420  Q
    ||||||||||||||||| |  | | ||| ||||||||| ||||||||||||||||||| |||| |||||||||| ||||    
T  23224527 gggtttgaagagctaggagctaaagtgaggcttaagcttgtggattcaagacctagaggtaagaggaatagattgcttt 23224605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 477 - 532
Target Start/End: Original strand, 14566495 - 14566550
Alignment:
Q  477 aattaagactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    |||| |||||||||||| |||| ||||||||| || |||||| |||||||||||||    
T  14566495 aattgagactttttgtggttttgaatgatgaaatttgtgctcctaattcatgtgaa 14566550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 483 - 532
Target Start/End: Original strand, 19977239 - 19977288
Alignment:
Q  483 gactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    ||||||| ||||| ||| |||||||||||||||||| |||| ||||||||    
T  19977239 gacttttggtgatctttgatgatgaatttcgtgctcctaatgcatgtgaa 19977288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 121; Significance: 2e-61; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 344 - 524
Target Start/End: Complemental strand, 52145 - 51965
Alignment:
Q  344 ggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcat 443  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||| ||| |||||||||||||||||||| |    
T  52145 ggtttgaaaagctagggggagattgaagcttaagctagtggactcaagacctagaggtaaaggggatagattcatttcatcaattaagctataatttctt 52046  T
Q  444 ctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaatt 524  Q
    |||| | ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||| |||||||||    
T  52045 ctttgtgattatgggtcataagtgattattgtgaattatgattttttgtgatttttgatgatgaattccgttctcttaatt 51965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 5e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 359 - 521
Target Start/End: Complemental strand, 13457281 - 13457119
Alignment:
Q  359 ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatggg 458  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||  ||||||||| |||| ||||    
T  13457281 ggggagattgaagcttaagctagcggattcaagacctagaggtaagggggatagattcttttcatcaattaagctataacgtcatcttttcaattttggg 13457182  T
Q  459 tcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctctta 521  Q
    || |||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  13457181 tcgtaagtgcttattgtgaattatgactttttgtgattttttatgatgaatttagtgctctta 13457119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 347 - 532
Target Start/End: Complemental strand, 17364483 - 17364308
Alignment:
Q  347 ttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataattt-catct 445  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||      | ||||||| ||| |||  ||| || |||||   |||||||| |||||    
T  17364483 ttgaagagctagggg-agattgaagcctaagctagtggattcaaga------ggtaagggggataaattattttcat-aatta---tataattttcatct 17364395  T
Q  446 ttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  17364394 tttcaattatgggtcataagtgattattgtgaattatgattttttgtgattttttatgatgaatttcgtgctcttaattcatgtgaa 17364308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 456 - 524
Target Start/End: Complemental strand, 26868078 - 26868010
Alignment:
Q  456 gggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaatt 524  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||||||||  ||||||||||||    
T  26868078 gggtcataagtgattattgtgaattatgattttttgtgatttttgatgatgaattctgtgctcttaatt 26868010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 487 - 533
Target Start/End: Original strand, 19859388 - 19859434
Alignment:
Q  487 ttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaaa 533  Q
    |||||||| | || |||||||||||||||||||||||||||||||||    
T  19859388 ttttgtgaatattgatgatgaatttcgtgctcttaattcatgtgaaa 19859434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 422 - 532
Target Start/End: Complemental strand, 26727968 - 26727857
Alignment:
Q  422 atcaattaagctataat-ttcatctttttaattatgggtcataagtgattat-tgtgaattaagactttttgtgatttttaatgatgaatttcgtgctct 519  Q
    ||||||||||  ||||| |||||||||| ||||||||||  |||||| || | ||| ||||  ||||||| ||||||||  ||||||| ||||||||||     
T  26727968 atcaattaagtcataatcttcatcttttcaattatgggttttaagtgcttttatgttaattgtgactttt-gtgattttcgatgatgagtttcgtgctcc 26727870  T
Q  520 taattcatgtgaa 532  Q
    |||||||||||||    
T  26727869 taattcatgtgaa 26727857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 2e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 360 - 524
Target Start/End: Complemental strand, 16095039 - 16094878
Alignment:
Q  360 gggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggt 459  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||| ||||||||||    
T  16095039 gggagattgaagcttaagctagtggattcaagacctagaggtaagggga-tagattcctttcatcaattaagcaataatttcttcttttcaattatgggt 16094941  T
Q  460 cataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaatt 524  Q
    |||||||||||||| |||||||  |  ||||||||||||| ||||||||||| ||||||||||||    
T  16094940 cataagtgattattatgaattataa--ttttgtgatttttgatgatgaattttgtgctcttaatt 16094878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 395 - 529
Target Start/End: Complemental strand, 20148889 - 20148756
Alignment:
Q  395 tagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggtcataagtgattattgtgaattaagactttttgtga 494  Q
    ||||| |||||||| ||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  20148889 tagaggtaagggga-tagattcctttcatcaattaagatataatttcttctttttgattatgggtcataagtgcttattgtgaattatgactttttgtga 20148791  T
Q  495 tttttaatgatgaatttcgtgctcttaattcatgt 529  Q
    ||||| ||||||||||| |||||||| ||| ||||    
T  20148790 ttttttatgatgaattttgtgctcttgatttatgt 20148756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 359 - 530
Target Start/End: Original strand, 17161043 - 17161216
Alignment:
Q  359 ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatggg 458  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | || ||||   ||||||||||||| ||||| |||| || || |||    
T  17161043 ggggagattgaagcttaagctagtggattcaagacctagaggtaagggggatata-tcattttcataattaagctataacttcatattttcaa-tacggg 17161140  T
Q  459 tcataagtgattattgtgaattaagacttttt-----gtgatttttaatgatgaatttcgtgctcttaattcatgtg 530  Q
    ||||||||| ||||||||||||| || |||||      ||| |||| ||||||| |||||||||||||||| |||||    
T  17161141 tcataagtgcttattgtgaattatgattttttttttcctga-ttttgatgatgactttcgtgctcttaatttatgtg 17161216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 486 - 531
Target Start/End: Original strand, 3170212 - 3170257
Alignment:
Q  486 tttttgtgatttttaatgatgaatttcgtgctcttaattcatgtga 531  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||    
T  3170212 tttttgtgaattttgatgatgaatttcgtgctcttaattcatgtga 3170257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 359 - 392
Target Start/End: Complemental strand, 20148942 - 20148909
Alignment:
Q  359 ggggagattgaagcttaagctagtggattcaaga 392  Q
    |||| |||||||||||||||||||||||||||||    
T  20148942 ggggtgattgaagcttaagctagtggattcaaga 20148909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 98; Significance: 1e-47; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 359 - 524
Target Start/End: Original strand, 30050 - 30215
Alignment:
Q  359 ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatggg 458  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||| ||||||||   |||| |||||||||| |||||||||    
T  30050 ggggagattgaagcttaaggtagttgattcaagacctagaggtaagggaaatagattccttttttcaattaaaaaataacttcatcttttcaattatggg 30149  T
Q  459 tcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaatt 524  Q
    ||||||||||||||||||||||| || || ||||||||||| |||||||||||  |||| ||||||    
T  30150 tcataagtgattattgtgaattatgatttgttgtgattttttatgatgaattttttgcttttaatt 30215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 343 - 499
Target Start/End: Complemental strand, 16228479 - 16228324
Alignment:
Q  343 gggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttca 442  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||  |||||| |||| ||||||||||| |||||||||    
T  16228479 gggtttgaagagctagggggagattgaaacttgagctagtggattcaagacctagagaaatggggggtagattactttcatcaattaagcaataatttca 16228380  T
Q  443 tctttttaattatgggtcataagtgattattgtgaattaagactttttgtgattttt 499  Q
     | |||| ||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  16228379 ac-ttttgattatgggtcatatgtgattattgggaattatgactttttgtgattttt 16228324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 350 - 499
Target Start/End: Complemental strand, 25263582 - 25263432
Alignment:
Q  350 aagagctag-ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttt 448  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||| ||  |||||| |||  ||| ||| |||||||||||||||||||||||||||    
T  25263582 aagagctagaggggagattgaagtttaagctagtggattcaagacctaaagggaagggggatatgttcttttcatcaattaagctataatttcatctttt 25263483  T
Q  449 taattatgggtcataagtgattattgtgaattaagactttttgtgattttt 499  Q
     | |||||| |||||| |||||||||||||||| |||||||||||||||||    
T  25263482 cagttatggatcataaatgattattgtgaattatgactttttgtgattttt 25263432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 16598748 - 16598625
Alignment:
Q  219 caccttctggtttgacttcatcttcatcaactttagcctttaatgctttatgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctg 318  Q
    |||||||||||||| ||| ||||||||||| ||||||||| |||| ||||||||| |||||| |||||||||||||| | |||||||| |||||||| ||    
T  16598748 caccttctggtttgtctttatcttcatcaagtttagccttcaatgttttatgatcattttcaatagatttagctgaattggcctgttcccgtaaaatttg 16598649  T
Q  319 cagcttcttccagtgattcgacat 342  Q
    ||||||||||| ||||||||||||    
T  16598648 cagcttcttcccgtgattcgacat 16598625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 22511661 - 22511734
Alignment:
Q  269 tgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgattcgacat 342  Q
    |||| ||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||    
T  22511661 tgattcttttcaatagatttagcagaattggcctgttctcgtaaaatctgcagcttcttccaatgattcgacat 22511734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 22518961 - 22519034
Alignment:
Q  269 tgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgattcgacat 342  Q
    |||| ||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||    
T  22518961 tgattcttttcaatagatttagcagaattggcctgttctcgtaaaatctgcagcttcttccaatgattcgacat 22519034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 36889462 - 36889524
Alignment:
Q  233 acttcatcttcatcaactttagcctttaatgctttatgatccttttcagtagatttagctgaa 295  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  36889462 acttcttcttcatcaagtttagcctttaatgctttatgacccttttcaatagatttagctgaa 36889524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 488 - 529
Target Start/End: Complemental strand, 21695277 - 21695236
Alignment:
Q  488 tttgtgatttttaatgatgaatttcgtgctcttaattcatgt 529  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  21695277 tttgtgatttttgatgatgaatttcgtgctcttaattcatgt 21695236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 24625059 - 24625010
Alignment:
Q  483 gactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    |||||||| || |||| ||||||||| ||||||||||||||| |||||||    
T  24625059 gactttttatgtttttaaatgatgaaattcgtgctcttaatttatgtgaa 24625010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 83; Significance: 1e-38; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 351 - 530
Target Start/End: Complemental strand, 3933 - 3753
Alignment:
Q  351 agagctag-ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattcctttta-tcaattaagctataatttcatctttt 448  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||| || ||||||| |||||| ||||| | |||||||||||||||| |||||||||    
T  3933 agagctagaggggagattgaagcttaagctagtggattgaaaacctataggtaagggggatagat-cctttcactcaattaagctataatctcatctttt 3835  T
Q  449 taattatgggtcataagtgattat-tgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtg 530  Q
     |||||||||||||||||| || | | | ||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||    
T  3834 caattatgggtcataagtgcttttgtattaattatgac-ttttgtgatttttgatgatgaatttcgtgctcttaatttatgtg 3753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 73; Significance: 9e-33; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 361 - 473
Target Start/End: Complemental strand, 17883 - 17771
Alignment:
Q  361 ggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggtc 460  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||| ||||  || |||||||    
T  17883 ggagattgaagcttaagttagtggattcaagacctagaggtaagggggatagattcatttcatcaattaagctataatttcatattttccatcatgggtc 17784  T
Q  461 ataagtgattatt 473  Q
    |||| ||||||||    
T  17783 ataaatgattatt 17771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 8e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 344 - 518
Target Start/End: Complemental strand, 9199402 - 9199228
Alignment:
Q  344 ggtttgaagagctaggggg-agattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataat-ttc 441  Q
    |||||||||||||||| |  | |||||||| ||||||||||  |||||||||||||| ||||| | |||| | | |||||| ||||||| |||||| |||    
T  9199402 ggtttgaagagctaggagctaaattgaagcctaagctagtgagttcaagacctagaggtaaggaggatagctcctttttat-aattaagttataatcttc 9199304  T
Q  442 atctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctc 518  Q
    ||||||| ||||||| |  ||| ||| |||| |||||||| |||||||| ||||||| |||| ||||||||||||||    
T  9199303 atcttttcaattatgaga-ataggtggttatggtgaattatgactttttatgattttaaatgttgaatttcgtgctc 9199228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 344 - 518
Target Start/End: Complemental strand, 9252985 - 9252811
Alignment:
Q  344 ggtttgaagagctaggggg-agattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataat-ttc 441  Q
    |||||||||||||||| |  | |||||||| |||||||||| ||||||||||||||  ||||||| ||| || | ||| || | ||||| |  ||  |||    
T  9252985 ggtttgaagagctaggagctaaattgaagcctaagctagtgaattcaagacctagatgtaagggggatatatccttttcat-agttaagtttcaaccttc 9252887  T
Q  442 atctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctc 518  Q
    ||||||| ||||||| |  | | ||| |||| |||||||| |||||||||||||||| |||| ||||||||||||||    
T  9252886 atcttttcaattatgaga-acaggtgcttatggtgaattatgactttttgtgattttgaatgttgaatttcgtgctc 9252811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 15692482 - 15692418
Alignment:
Q  367 tgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaag 431  Q
    ||||||||||||||| ||| |||||| |||||| |||||||||| | ||||||| ||||||||||    
T  15692482 tgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaag 15692418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 369 - 518
Target Start/End: Complemental strand, 9270721 - 9270573
Alignment:
Q  369 aagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataat-ttcatctttttaattatgggtcataagtg 467  Q
    |||| |||| ||||| ||||||||||||||| |||||||  || || | ||| || ||||||| || ||  |||||||||| ||||||| |  ||| ||     
T  9270721 aagcctaagttagtgaattcaagacctagaggtaaggggggtatatccttttcat-aattaagttacaaccttcatcttttcaattatgaga-ataggta 9270624  T
Q  468 attattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctc 518  Q
     |||| |||||||| |||||||||||||||| |||| ||||||||||||||    
T  9270623 cttatggtgaattatgactttttgtgattttgaatgttgaatttcgtgctc 9270573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 28801048 - 28800999
Alignment:
Q  483 gactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    ||||||||| | |||| ||||||||| |||||||||||||||||||||||    
T  28801048 gactttttgaggttttgaatgatgaaattcgtgctcttaattcatgtgaa 28800999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 487 - 532
Target Start/End: Complemental strand, 17960047 - 17960002
Alignment:
Q  487 ttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    ||||||||||||| ||||||||||| |||||||||| ||| |||||    
T  17960047 ttttgtgatttttcatgatgaattttgtgctcttaactcaagtgaa 17960002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 365 - 471
Target Start/End: Original strand, 21909966 - 21910071
Alignment:
Q  365 attgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggtcataa 464  Q
    ||||||| |||||||| | |||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||   |  | ||||||||||||||    
T  21909966 attgaagtttaagctaatagattcaagacctagaggtaagggggatagatttctttcatcaattaagctataatttca-aatagtgattatgggtcataa 21910064  T
Q  465 gtgatta 471  Q
    |||||||    
T  21910065 gtgatta 21910071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 486 - 532
Target Start/End: Complemental strand, 24282118 - 24282072
Alignment:
Q  486 tttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    |||||||| |||| |||||| || |||||||||||||||||||||||    
T  24282118 tttttgtgtttttgaatgataaaattcgtgctcttaattcatgtgaa 24282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 2098 - 2018
Alignment:
Q  262 tgctttatgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgattcgacat 342  Q
    |||||| |||||||||||| |||||||||||||| | |||| |||||||||||| ||||||||||| |||||||| |||||    
T  2098 tgctttctgatccttttcaatagatttagctgaatttgcctattctcgtaaaatatgcagcttctttcagtgatttgacat 2018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 15355 - 15288
Alignment:
Q  269 tgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgatt 336  Q
    |||||||||||| |||||||| ||||| |  | |||||| |||||||||||||||||||| |||||||    
T  15355 tgatccttttcaatagatttaactgaattgacatgttcttgtaaaatctgcagcttcttcaagtgatt 15288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 18080 - 18000
Alignment:
Q  262 tgctttatgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgattcgacat 342  Q
    |||||| |||||||||||| |||||||||||||| | |||| |||||||||||| ||||||||||| | |||||| |||||    
T  18080 tgctttctgatccttttcaatagatttagctgaatttgcctattctcgtaaaatatgcagcttctttctgtgatttgacat 18000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 155197 - 155133
Alignment:
Q  465 gtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaattcatgt 529  Q
    ||||||||| ||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||    
T  155197 gtgattattctgaattatgactttttgtgatttttgaagatgaattttgtgctcttaattcatgt 155133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 422 - 530
Target Start/End: Original strand, 36736 - 36844
Alignment:
Q  422 atcaattaagctataatttcatctttttaattatgggtcataagtgattat-tgtgaattaagactttttgtgatttttaatgatgaatttcgtgctctt 520  Q
    ||||| || |||||||| ||||||||||| || ||||||||||||| || | ||||||||| || |||| ||||||||| ||| |||||||||||||| |    
T  36736 atcaaatatgctataatctcatctttttacttttgggtcataagtgcttttgtgtgaattacgaatttt-gtgatttttgatgttgaatttcgtgctcct 36834  T
Q  521 aattcatgtg 530  Q
    |||| |||||    
T  36835 aatttatgtg 36844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 425 - 532
Target Start/End: Original strand, 6637 - 6743
Alignment:
Q  425 aattaagctataatttcatctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaatt 524  Q
    ||||||| | ||| |||||||||| |||||| ||  |||| || ||||||||||||| |||||||||||| |||| ||||| |||| ||| |||||||||    
T  6637 aattaagatctaacttcatcttttaaattattgga-ataaatgcttattgtgaattatgactttttgtgaattttgatgataaattccgttctcttaatt 6735  T
Q  525 catgtgaa 532  Q
    || |||||    
T  6736 caagtgaa 6743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 483 - 529
Target Start/End: Complemental strand, 21402791 - 21402745
Alignment:
Q  483 gactttttgtgatttttaatgatgaatttcgtgctcttaattcatgt 529  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  21402791 gactttttgtgattttgaatgatgaatttcgtgctcataattcatgt 21402745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 21719871 - 21719824
Alignment:
Q  485 ctttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  21719871 cttttggtgattttttatgatgaatttcgtgctcctaattcatgtgaa 21719824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 21423462 - 21423406
Alignment:
Q  477 aattaagactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaaa 533  Q
    ||||| |||||||||||||||| |||||| || ||| |||||||| |||||||||||    
T  21423462 aattatgactttttgtgattttaaatgataaaattcctgctcttatttcatgtgaaa 21423406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 487 - 532
Target Start/End: Original strand, 1031 - 1076
Alignment:
Q  487 ttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    |||||||| |||| |||||||||||||| |||||||||||||||||    
T  1031 ttttgtgaattttgatgatgaatttcgtactcttaattcatgtgaa 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 1895 - 1846
Alignment:
Q  483 gactttttgtgatttttaatgatgaatttcgtgctcttaattcatgtgaa 532  Q
    ||||||||||| |||| ||||||||| ||| ||||| |||||||||||||    
T  1895 gactttttgtggttttgaatgatgaaattcatgctcctaattcatgtgaa 1846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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