View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8371_low_11 (Length: 355)
Name: NF8371_low_11
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_low_11 |
 |  |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 351
Target Start/End: Original strand, 3816608 - 3816930
Alignment:
| Q |
28 |
aaaccgtctatatcacgaaaatacaaaaattt-caggttggtcatcttatcaaa-tacatgacggcttaactttagctccctcattgttggcaaacttat |
125 |
Q |
| |
|
||||| |||||| ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3816608 |
aaaccttctataccaccaaaatacaaaaaaccgcaggttggtcatcttatcaaaatacatgacggcttaacttcagctccctcattgttggcaaacttat |
3816707 |
T |
 |
| Q |
126 |
gcttctaatagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaa |
225 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
3816708 |
gcttctaatagcattggtaccctgcaatcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaatcgacatgacaaatattaatctaa |
3816807 |
T |
 |
| Q |
226 |
aaatgacatattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttgg |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || || || ||||||||||| |
|
|
| T |
3816808 |
aaatgacatattttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgttttccaagg---tcactagattcttgc |
3816904 |
T |
 |
| Q |
326 |
cgaactacctcccgacccatttcttg |
351 |
Q |
| |
|
||||| | ||||| |||||||||||| |
|
|
| T |
3816905 |
cgaacaatctcccaacccatttcttg |
3816930 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 355
Target Start/End: Original strand, 3809003 - 3809351
Alignment:
| Q |
2 |
attgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttag |
101 |
Q |
| |
|
|||||| || ||||||||||| || |||| |||||||||| ||||||||||||| || ||||||||||||||||||||| || ||||||||| || |
|
|
| T |
3809003 |
attgaaacctttgaggaagacaattgaaactatctatatcaccaaaatacaaaaatcgaagtttggtcatcttatcaaatacacgagggcttaactcgag |
3809102 |
T |
 |
| Q |
102 |
ctccctcattgttggcaaacttatgcttctaatagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaa |
201 |
Q |
| |
|
|| |||||||||| ||| |||||||||||| |||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3809103 |
cttcctcattgttcgcagacttatgcttcttatagaatcagtaccctg---tcatgaaagtaaaataaaacattaaaatctttgaaaggcacctttttaa |
3809199 |
T |
 |
| Q |
202 |
ccaacatgacaaatattaatctaaaaatgacatattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttt |
301 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3809200 |
c-aacatgacaaatgtta-tctaaaaatgacatactttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgtttt |
3809297 |
T |
 |
| Q |
302 |
tcagggtgttctctagattcttggcgaactacctcccgacccatttcttgtaga |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3809298 |
tcagggtgttctctagattcttggcgaactacctcccgacccatttcttgtaga |
3809351 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 3920646 - 3920530
Alignment:
| Q |
239 |
tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc |
338 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3920646 |
tttaccttgtcatttttcaatacatcacaaatgtcatcaacatcccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc |
3920547 |
T |
 |
| Q |
339 |
gacccatttcttgtaga |
355 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3920546 |
gacccatttcttgtaga |
3920530 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 45 - 351
Target Start/End: Original strand, 3986022 - 3986329
Alignment:
| Q |
45 |
aaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaa------acttatgcttctaatagca |
138 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| ||||||||| | |||||||||| |||| ||| |||| || ||| || |||||||||||||||| |
|
|
| T |
3986022 |
aaaatccaaaaatttcaggttcgtcatcttagcaaatacatcagggcttaacttcagcttcctaattgctgacaagtttagacatatgcttctaatagca |
3986121 |
T |
 |
| Q |
139 |
ttggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaaaaatgacatattt |
238 |
Q |
| |
|
| ||| |||| ||||||| | |||| |||| |||| || ||||||| |||||||| |||||| || |||||| ||| | |||| ||| |||||| |
|
|
| T |
3986122 |
tcagtaccctg---tcatgaatggaaaagaaaattctaaa-tcattgaaagacacattttaaaccaaaataacaaatgtta-tgtaaagatgctatattt |
3986216 |
T |
 |
| Q |
239 |
tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc |
338 |
Q |
| |
|
| ||||||||||||||| || ||||| |||||||||| ||| |||||||||||||||||| | |||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
3986217 |
tataccttgtcattttttaagacatcgcaaatttcatcatgatcccataatcgactgcgtttgtttgggtattcactagattcttggcgaacaacctccc |
3986316 |
T |
 |
| Q |
339 |
gacccatttcttg |
351 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3986317 |
gacccatttcttg |
3986329 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 4024454 - 4024570
Alignment:
| Q |
239 |
tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc |
338 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||| ||| ||||||||||||||||||| ||||| | | ||||||||||||||||| ||||||| |
|
|
| T |
4024454 |
tttaccttgtcattttccaatacatcacaaatgtcatcatgatcccataatcgactgcgttttctagggtctgcactagattcttggcgaacaacctccc |
4024553 |
T |
 |
| Q |
339 |
gacccatttcttgtaga |
355 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4024554 |
gacccatttcttgtaga |
4024570 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 349
Target Start/End: Original strand, 3800570 - 3800920
Alignment:
| Q |
2 |
attgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttag |
101 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||| | || || |||||| |||| || || ||||||||||||| ||||||||||| |||||||||| || |
|
|
| T |
3800570 |
attgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatccaaatatcgcaagttggtcatcttagcaaatacatgagggcttaacttcag |
3800669 |
T |
 |
| Q |
102 |
ctccctcattgttggcaa------acttatgcttctaatagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacat |
195 |
Q |
| |
|
|| ||| | || || ||| || ||||||||||||||||| ||| ||| | ||| || |||||| |||| ||| |||| ||||||| || || |
|
|
| T |
3800670 |
cttcctaaatgatgacaagtctacacgtatgcttctaatagcatcagtaccctac---cattaacgtaaaagaaaa-atttcaatcattgaaagccatat |
3800765 |
T |
 |
| Q |
196 |
ttttaaccaacatgacaaatattaatctaaaaatgaca--tattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgac |
293 |
Q |
| |
|
|||||||||| || ||| || ||| ||| ||| | || |||||||||||||||||||||||||||||||||| || ||| |||| |||||| ||| |
|
|
| T |
3800766 |
ttttaaccaaaataacatatgtta-tctgaaatagccaaatattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgac |
3800864 |
T |
 |
| Q |
294 |
tgcgtttttcagggtgttctctagattcttggcgaactacctcccgacccatttct |
349 |
Q |
| |
|
||| |||| ||||| ||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
3800865 |
tgcattttctagggtcttcactatattcttggcgaacaacctcccgacccatttct |
3800920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 3956396 - 3956274
Alignment:
| Q |
233 |
atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||| ||||| |||||||||||| |||| ||||| ||| || |||||||||||||| | |
|
|
| T |
3956396 |
atattttttaccttgtcatttttcaatacatcatagataatatcaggattggataatcgactgcattttctagggtcttcactggattcttggcgaacaa |
3956297 |
T |
 |
| Q |
333 |
cctcccgacccatttcttgtaga |
355 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3956296 |
cctcccgacccatttcttgtaga |
3956274 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 4001522 - 4001642
Alignment:
| Q |
233 |
atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |||| |||||| ||||| ||||| ||||| ||| ||||||||||||||||| | |
|
|
| T |
4001522 |
atattttttaccttgtcatttttcaatacatagcaaatgtcatcaggatcccataaccgacttcgtttactagggtcttcactagattcttggcgaacaa |
4001621 |
T |
 |
| Q |
333 |
cctcccgacccatttcttgta |
353 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4001622 |
cctcccgacccatttcttgta |
4001642 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 3956616 - 3956520
Alignment:
| Q |
2 |
attgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactt |
98 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||| ||||| |||||||||| |||||| | |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3956616 |
attgaatcccttcaggaatacgatccaaaccatctatgtcacgaaaatccaaaaactgcaggttggtcatcttatcaaatacattggggcttaactt |
3956520 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 3933867 - 3933758
Alignment:
| Q |
239 |
tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc |
338 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| |||| || || || ||||||||||| ||||| ||||||| |
|
|
| T |
3933867 |
tttaccttgtcatttttcaatacatcaaaaatgtcatcaacatcccataatcgactgcattttccaagg---tcactagattcttgccgaacaacctccc |
3933771 |
T |
 |
| Q |
339 |
gacccatttcttg |
351 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3933770 |
aacccatttcttg |
3933758 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 355
Target Start/End: Original strand, 4009212 - 4009334
Alignment:
| Q |
233 |
atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta |
332 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| || ||| |||| ||||| | |||||| |||| ||| | ||| |||||||||| ||||| | |
|
|
| T |
4009212 |
atatattttaccttgtcgtttttcaatacatcatagataatatcaggatcccatagttgactgcattttataggatcttcactagattcttaacgaacaa |
4009311 |
T |
 |
| Q |
333 |
cctcccgacccatttcttgtaga |
355 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4009312 |
cctcccgacccatttcttgtaga |
4009334 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 3920833 - 3920775
Alignment:
| Q |
45 |
aaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttagct |
103 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3920833 |
aaaatccaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagct |
3920775 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 3934054 - 3933996
Alignment:
| Q |
45 |
aaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttagct |
103 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3934054 |
aaaattcaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagct |
3933996 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 4217653 - 4217706
Alignment:
| Q |
45 |
aaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactt |
98 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
4217653 |
aaaattcaaaaatttcaggttggtcatcttagcaaatacatgagggcttaactt |
4217706 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 4001276 - 4001377
Alignment:
| Q |
2 |
attgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttag |
101 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||| | || || |||| |||| || |||||||||||||||| ||||||||||| |||||||||| || |
|
|
| T |
4001276 |
attgaagcccttgaggaagaagttccaaatcgtatttaccaatgaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaacttcag |
4001375 |
T |
 |
| Q |
102 |
ct |
103 |
Q |
| |
|
|| |
|
|
| T |
4001376 |
ct |
4001377 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 3964166 - 3964055
Alignment:
| Q |
239 |
tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc |
338 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||| || |||||||||||| || || |||||| | | || |||||||||||||| | ||||| |
|
|
| T |
3964166 |
tttaccttgtcattttttaatacttcataaatgtcatc---atcccataatcgactacggcttccagggtctccacttgattcttggcgaacaatctccc |
3964070 |
T |
 |
| Q |
339 |
gacccatttcttgta |
353 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
3964069 |
tacccatgtcttgta |
3964055 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 345
Target Start/End: Original strand, 4217856 - 4217968
Alignment:
| Q |
233 |
atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta |
332 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| ||||| |||| |||||| ||||| |||| ||||| || |||||||| ||||||| | |
|
|
| T |
4217856 |
atattttttaccttgtcattttccaatacatagcaaatgtcatcaggatcccataaccgactttgtttactagggtctttaatagattctaggcgaacaa |
4217955 |
T |
 |
| Q |
333 |
cctcccgacccat |
345 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4217956 |
cctcccgacccat |
4217968 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 4009034 - 4009093
Alignment:
| Q |
44 |
gaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaactttagct |
103 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
4009034 |
gaaaatccaaaaatagcaggttggtcatcttagcaaatacatgagggcttaacttcagct |
4009093 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 4024254 - 4024309
Alignment:
| Q |
41 |
cacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaac |
96 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
4024254 |
cacgaaaatccaaaaattgcaggttggtcatcttagcaaatgcatgagagcttaac |
4024309 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 13396943 - 13397087
Alignment:
| Q |
1 |
aattgaagcccttgaggaagacgatccaaaccgtctatatcacgaaaatacaaaaatttcaggttggtcatcttatcaaatacatgacggcttaacttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |
|
|
| T |
13396943 |
aattgaagcccttgaggaagacgatccaaaccgtctatatcatgaaaatacaaaaatttcaggttggtcatcttatcaaatacaggcgggcttaacttca |
13397042 |
T |
 |
| Q |
101 |
gctccctcattgttggcaa------acttatgcttctaatagcat |
139 |
Q |
| |
|
||| ||| |||| || ||| |||||||||||||||||||| |
|
|
| T |
13397043 |
gcttcctaattgctgacaagtctacacttatgcttctaatagcat |
13397087 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 355
Target Start/End: Original strand, 13397124 - 13397285
Alignment:
| Q |
194 |
atttttaaccaacatgacaaatattaatctaaaaatgacatatttt-ttaccttgtcatttttcaatacatcataaatttcatctggattccataatcga |
292 |
Q |
| |
|
|||||| ||||| ||||||||| ||| ||||||| || || ||||| ||||||||||||||||||||||||| || || ||| |||| |||||||||| |
|
|
| T |
13397124 |
attttttaccaaaatgacaaatgtta-tctaaaattgccaaatttttttaccttgtcatttttcaatacatcgtagataatatcaggatcccataatcga |
13397222 |
T |
 |
| Q |
293 |
ctgcgtttttcagggtgttctctagattcttggcgaactacctcccgacccatttcttgtaga |
355 |
Q |
| |
|
|||| |||| ||||| ||| ||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
13397223 |
ctgcattttctagggtcttcactagattcttggcgaacaacctcgcgacccatttcctgtaga |
13397285 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 23454238 - 23454306
Alignment:
| Q |
240 |
ttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggt |
308 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||| || | |||||| |||||||| |||||| |||||| |
|
|
| T |
23454238 |
ttaccttgttttttttcaatacatcagatatttcttcagcattccacaatcgacttcgttttccagggt |
23454306 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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