View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8371_low_12 (Length: 344)

Name: NF8371_low_12
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8371_low_12
NF8371_low_12
[»] chr8 (1 HSPs)
chr8 (1-334)||(25588813-25589147)
[»] chr5 (1 HSPs)
chr5 (1-334)||(26374028-26374362)
[»] chr6 (5 HSPs)
chr6 (108-333)||(14127350-14127576)
chr6 (144-332)||(12917333-12917522)
chr6 (5-104)||(14127205-14127304)
chr6 (155-333)||(8758022-8758201)
chr6 (2-71)||(12927368-12927437)
[»] chr3 (4 HSPs)
chr3 (108-333)||(17918498-17918724)
chr3 (144-333)||(15428729-15428919)
chr3 (1-104)||(17918770-17918873)
chr3 (2-71)||(15429010-15429079)
[»] chr2 (2 HSPs)
chr2 (109-331)||(24081380-24081602)
chr2 (5-77)||(24081234-24081306)
[»] scaffold0071 (2 HSPs)
scaffold0071 (144-333)||(33319-33509)
scaffold0071 (2-71)||(33159-33228)


Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 25589147 - 25588813
Alignment:
Q  1 tggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaagtggcgtagcttgtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589147 tggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaagtggcgtagcttgtgg 25589048  T
Q  101 tattggagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggct 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589047 tattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggct 25588948  T
Q  201 aaagtgctg-atggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtga 299  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588947 aaagtgctgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtga 25588848  T
Q  300 ttttattttgccccggtaaagaagacatgatgtcc 334  Q
    |||||||||||||||||||||||||||||||||||    
T  25588847 ttttattttgccccggtaaagaagacatgatgtcc 25588813  T

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Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 26374362 - 26374028
Alignment:
Q  1 tggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaagtggcgtagcttgtgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26374362 tggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaagtggcgtagcttgtga 26374263  T
Q  101 tattggagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggct 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374262 tattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggct 26374163  T
Q  201 aaagtgctg-atggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtga 299  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374162 aaagtgctgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtga 26374063  T
Q  300 ttttattttgccccggtaaagaagacatgatgtcc 334  Q
    |||||||||||||||||||||||||||||||||||    
T  26374062 ttttattttgccccggtaaagaagacatgatgtcc 26374028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 108 - 333
Target Start/End: Original strand, 14127350 - 14127576
Alignment:
Q  108 gatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgc 207  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  14127350 gatgcacccaaggtgattggtgaagcaaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaagaggcgttggctaaattgc 14127449  T
Q  208 tga-tggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttatt 306  Q
    ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14127450 tgaatgggcaatttattccaattgttcaacagaaaatcattgatgctggctttgataatgttcgtgtagtacctagaggtggagataatgtgattttatt 14127549  T
Q  307 ttgccccggtaaagaagacatgatgtc 333  Q
    ||  |||||||||||||||||||||||    
T  14127550 ttttcccggtaaagaagacatgatgtc 14127576  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 144 - 332
Target Start/End: Complemental strand, 12917522 - 12917333
Alignment:
Q  144 cgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctga-tggggattttattccaattgttcaacagaaaa 242  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||||||||| || | |||||||| |||||| | |||||| ||||| ||||| ||||    
T  12917522 cgcaagtttatttccgataatgaagatgttgtttgggcaagtaaaggggcgtttgcaagagtgctgaatggggactatattcctattgtgcaacaaaaaa 12917423  T
Q  243 tcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgt 332  Q
    ||||||||||||| |||||| || |||||||  ||||||||||||||||||||||| || | ||||| ||||| |||||||| |||||||    
T  12917422 tcattgatgctggttttgataatattcgtgtgttacctagaggtggagataatgtggttcttttttgtcccggcaaagaagatatgatgt 12917333  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 14127205 - 14127304
Alignment:
Q  5 gttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaagtggcgtagcttgtggtatt 104  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  14127205 gttggttagaaaacacgcacttgagcaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaagtggcgtagctggtgatatt 14127304  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 333
Target Start/End: Complemental strand, 8758201 - 8758022
Alignment:
Q  155 ttctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctg-atggggattttattccaattgttcaacagaaaatcattgatgct 253  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| | |||| || |||| || ||||| ||   ||| ||||| ||||| |||||||      
T  8758201 ttctgataatgatgatgttgtttgggcaagtaaaggtgcgttggcaagagtgttgaatggagaatttataccttctgtgcaacaaaaaattattgatgtc 8758102  T
Q  254 ggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtc 333  Q
    || |||||| |||| || ||  | |||||||| ||  |||| ||| |||||||||| || || ||||| |||||||||||    
T  8758101 gggtttgataatgtccgggtgctgcctagagggggcaataacgtggttttattttgtccaggaaaagacgacatgatgtc 8758022  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 12927437 - 12927368
Alignment:
Q  2 ggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggag 71  Q
    |||||||||||||||  | || |||||||||||||||||  ||||||||| |||||||||||||||||||    
T  12927437 ggcgttggctagaaagcaggctcttgaacaggttaaattagatgctaaggttagtgaggaggaaagggag 12927368  T

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Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 108 - 333
Target Start/End: Complemental strand, 17918724 - 17918498
Alignment:
Q  108 gatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgc 207  Q
    |||||||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17918724 gatgcacccaaggtgattggtgaagcaaaagtcacgcgcaagtatcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctacagtgc 17918625  T
Q  208 tga-tggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttatt 306  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  17918624 tgaatggggattttattccaattgttcaacagaaaatcattgatgttggctttgaaaatgttcgtgtagtacctagaggtggagataatgtgattttatt 17918525  T
Q  307 ttgccccggtaaagaagacatgatgtc 333  Q
    |||| ||||||||||||||||||||||    
T  17918524 ttgctccggtaaagaagacatgatgtc 17918498  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 144 - 333
Target Start/End: Complemental strand, 15428919 - 15428729
Alignment:
Q  144 cgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctga-tggggattttattccaattgttcaacagaaaa 242  Q
    |||||||||  ||| ||||| |||||||||||||||||||||||||||||||| || | |||||| | |||||| | |||||| ||||| ||||||||||    
T  15428919 cgcaagtttgtttccgataacgaagatgttgtttgggcaagtaaaggggcgtttgcaagagtgctaaatggggactgtattcctattgtgcaacagaaaa 15428820  T
Q  243 tcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtc 333  Q
    ||||||| ||||| |||||| ||||||| ||  |||||||||| |||||||||||| |||||||||| | ||| ||||| || ||||||||    
T  15428819 tcattgacgctggttttgataatgttcgggtgttacctagaggaggagataatgtggttttattttgtctcggcaaagatgatatgatgtc 15428729  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17918873 - 17918770
Alignment:
Q  1 tggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaagtggcgtagcttgtgg 100  Q
    |||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||     
T  17918873 tggcgttggctagaaaacgcgcacttgagcaagttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaagcggcggagctggtgt 17918774  T
Q  101 tatt 104  Q
    ||||    
T  17918773 tatt 17918770  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 15429079 - 15429010
Alignment:
Q  2 ggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggag 71  Q
    |||||||||||||||  | || ||||||||||||||||| ||||| || |  ||||||||||||||||||    
T  15429079 ggcgttggctagaaagcaggctcttgaacaggttaaattaaatgcgaatgagagtgaggaggaaagggag 15429010  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 109 - 331
Target Start/End: Original strand, 24081380 - 24081602
Alignment:
Q  109 atgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgct 208  Q
    ||||| |||||||||||||||  || |  || |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| | |||| |    
T  24081380 atgcatccaaggtgaatggtggcgcaattgttacgcgcaagtttcattctgataatgatgatgttgtttgggcaagtaaagggt-gttggcaagagtgtt 24081478  T
Q  209 ga-tggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattt 307  Q
    || || | | |||||||| ||| | ||||||||||||||||||||||| || ||| ||||||| ||  |||||||||| |||||||||| | ||||||||    
T  24081479 gaatgagaactttattcctattatgcaacagaaaatcattgatgctggtttcgataatgttcgggtgttacctagaggaggagataatgaggttttattt 24081578  T
Q  308 tgccccggtaaagaagacatgatg 331  Q
    || ||| |||||||||||||||||    
T  24081579 tgtccccgtaaagaagacatgatg 24081602  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 24081234 - 24081306
Alignment:
Q  5 gttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagta 77  Q
    ||||||||||||  | |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  24081234 gttggctagaaagcaggcacttgagcaagttaaattgaatgctaagggtagtgaggaggaaagggagaaagta 24081306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 144 - 333
Target Start/End: Original strand, 33319 - 33509
Alignment:
Q  144 cgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctga-tggggattttattccaattgttcaacagaaaa 242  Q
    |||||||||  ||| ||||| |||||||||||||||||||||||||||||||| || | |||||| | |||||| | |||||| ||||| ||||||||||    
T  33319 cgcaagtttgtttccgataacgaagatgttgtttgggcaagtaaaggggcgtttgcaagagtgctaaatggggactgtattcctattgtgcaacagaaaa 33418  T
Q  243 tcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtc 333  Q
    ||||||| ||||| |||||| ||||||| ||  |||||||||| |||||||||||| |||||||||| | ||| ||||| || ||||||||    
T  33419 tcattgacgctggttttgataatgttcgggtgttacctagaggaggagataatgtggttttattttgtctcggcaaagatgatatgatgtc 33509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 33159 - 33228
Alignment:
Q  2 ggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggag 71  Q
    |||||||||||||||  | || ||||||||||||||||| ||||| || |  ||||||||||||||||||    
T  33159 ggcgttggctagaaagcaggctcttgaacaggttaaattaaatgcgaatgagagtgaggaggaaagggag 33228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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