View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8371_low_13 (Length: 344)

Name: NF8371_low_13
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8371_low_13
NF8371_low_13
[»] chr1 (6 HSPs)
chr1 (2-175)||(32168853-32169026)
chr1 (170-275)||(32168568-32168673)
chr1 (274-325)||(32168242-32168293)
chr1 (2-51)||(32165186-32165235)
chr1 (2-38)||(27325115-27325151)
chr1 (2-49)||(27350134-27350181)
[»] chr5 (1 HSPs)
chr5 (12-50)||(29689527-29689565)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 32169026 - 32168853
Alignment:
Q  2 ctctattcctcgttttggtcttagatggtttactcctgttgctgaggtactgcaatttatcaccacaaatcatacatacnnnnnnnnnnnngtataatgt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||    
T  32169026 ctctattcctcgttttggtcttagatggtttactcctgttgctgaggtactgcaatttatcaccacaaatcatacatacttttttctttttgtataatgt 32168927  T
Q  102 aactgtagaatttaagagccaagcacatgtgacaatttttgaaagcaagttgagtatgactcatagttactaat 175  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32168926 aaccgtagaatttaagagccaagtacatgtgacaatttttgaaagcaagttgagtatgactcatagttactaat 32168853  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 32168673 - 32168568
Alignment:
Q  170 actaataagcggaaatggccttaaaaggttcagaggtaacgttgtaatctagatcgtaacatttaaataccgtctgtacactgtaaacttgaatatttag 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32168673 actaataagcggaaatggccttaaaaggttcagaggtaacgttgtaatctagatcgtagcatttaaataccgtctgtacactgtaaacttgaatatttag 32168574  T
Q  270 tttata 275  Q
    ||||||    
T  32168573 tttata 32168568  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 32168293 - 32168242
Alignment:
Q  274 taatacaaagcaactgccgcgtgtctcagcagtctgaaacgtaggcaatatt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32168293 taatacaaagcaactgccgcgtgtctcagcagtctgaaacgtaggcaatatt 32168242  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 32165235 - 32165186
Alignment:
Q  2 ctctattcctcgttttggtcttagatggtttactcctgttgctgaggtac 51  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32165235 ctctattcctcgttttggtcttagatggtttactcctgttgttgaggtac 32165186  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 27325151 - 27325115
Alignment:
Q  2 ctctattcctcgttttggtcttagatggtttactcct 38  Q
    ||||||||||||||||||||| |||||||||||||||    
T  27325151 ctctattcctcgttttggtctcagatggtttactcct 27325115  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 27350181 - 27350134
Alignment:
Q  2 ctctattcctcgttttggtcttagatggtttactcctgttgctgaggt 49  Q
    ||||||||||||||||||||| | ||||||||||||| ||| ||||||    
T  27350181 ctctattcctcgttttggtctgaaatggtttactcctattgttgaggt 27350134  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 29689527 - 29689565
Alignment:
Q  12 cgttttggtcttagatggtttactcctgttgctgaggta 50  Q
    |||||||||||||||||||||||||||||| || |||||    
T  29689527 cgttttggtcttagatggtttactcctgttactaaggta 29689565  T

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