View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8371_low_14 (Length: 333)
Name: NF8371_low_14
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 78 - 285
Target Start/End: Original strand, 28319300 - 28319509
Alignment:
| Q |
78 |
gaacaagagggtaaaatttgtgcaataaactgaaaaatatgccaaaaaagtcatcctaaccaaagtgtgaaacctgtatatgcatatgccatgctttcaa |
177 |
Q |
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| T |
28319300 |
gaacaagagggtaaaatttgtacaagaaactgaaaaatatgccaaaaaagtcatcctaaccaaagtgtgaaacctgtatatgcatatgccatgctttcaa |
28319399 |
T |
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| Q |
178 |
cttagcaagctatgtttctcc--atatagctctactattccaaagaaaaattcactcttgaatctaatgtactatgtgaaagtaaactaagaaatttctt |
275 |
Q |
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| T |
28319400 |
cttagcaagctatgtttctccatatatagctctactattccaaagaaaaattcacccttgaatctaatgtactatgtgaaagtagactaagaaatttctt |
28319499 |
T |
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| Q |
276 |
tctgcatata |
285 |
Q |
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|||||||||| |
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| T |
28319500 |
tctgcatata |
28319509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 28319240 - 28319281
Alignment:
| Q |
20 |
ttgagatgctattatt-aagaacaagagggtaaaattaattt |
60 |
Q |
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| T |
28319240 |
ttgagatgctattatttaagaacaagatggtaaaattaattt |
28319281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 50910795 - 50910839
Alignment:
| Q |
202 |
tagctctactattccaaagaaaaattcactcttgaatctaatgta |
246 |
Q |
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||||| ||||||||||||||||||||||| |||| || ||||||| |
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| T |
50910795 |
tagctttactattccaaagaaaaattcacccttgcatttaatgta |
50910839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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