View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8371_low_15 (Length: 293)
Name: NF8371_low_15
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 9229439 - 9229174
Alignment:
| Q |
11 |
cagagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagcct |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9229439 |
cagagaaaagtgatgtttatagcttcggggtagtactggcagagctcctaacgggggagaaacctatttcttttaatagaccagaagaaaacagaagcct |
9229340 |
T |
|
| Q |
111 |
tgcaattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9229339 |
tgcaattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagtt |
9229240 |
T |
|
| Q |
211 |
gctattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggct |
276 |
Q |
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| T |
9229239 |
gctattcttgctgcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggct |
9229174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 9161645 - 9161381
Alignment:
| Q |
11 |
cagagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagcct |
110 |
Q |
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||||||||||||||||||||||||| || ||||| || |||||| | || ||||| || |||||| ||||||||||||| ||||||||||| | || || |
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| T |
9161645 |
cagagaaaagtgatgtttatagctttggtgtagttcttgcagagcttcttacgggagacaaacctctttcttttaataggccagaagagaatatcagtct |
9161546 |
T |
|
| Q |
111 |
tgcaattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagtt |
210 |
Q |
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| T |
9161545 |
tgctatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtattttaaatgatgaaaacaaggaggagattaaggaggtt |
9161446 |
T |
|
| Q |
211 |
gctattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggc |
275 |
Q |
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| T |
9161445 |
gctattcttgcagcaaggtgtttgagactaagaggggatgaaaggcctagcatgaaggaagtggc |
9161381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 9118809 - 9119062
Alignment:
| Q |
13 |
gagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttg |
112 |
Q |
| |
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||||||||||||||||||||||| || ||||| || |||||| | ||||| || || |||||| || |||||| || |||||||||| || || |||| |
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| T |
9118809 |
gagaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctcttgattttaacaggccagaagagaccattagtcttg |
9118908 |
T |
|
| Q |
113 |
caattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgc |
212 |
Q |
| |
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| || |||||||| |||||||||| | | || | | | ||||| | |||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
9118909 |
ctatgcacttcttgtcttgtttaaaacaagataaactttttgaagctattcaagttggaattttgaatgatgataacaaggaagagattaaggaggttgc |
9119008 |
T |
|
| Q |
213 |
tattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaa |
266 |
Q |
| |
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|||||||||||||||||| ||||||||| ||| |||||||||||||| ||||| |
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| T |
9119009 |
tattcttgcagcaaggtgtttgagacttcgaggagaggaaagacctagtatgaa |
9119062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 9170466 - 9170207
Alignment:
| Q |
16 |
aaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttgcaa |
115 |
Q |
| |
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|||||||||||||||||||| || ||||| || |||||| | ||||| || || |||||| ||||||||||||| |||||||||| || || ||||| | |
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| T |
9170466 |
aaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaagagaccattagtcttgcta |
9170367 |
T |
|
| Q |
116 |
ttcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctat |
215 |
Q |
| |
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| ||||| || |||||||||| | | || | | | ||||| | |||||||||| || |||| ||||| |||||| | ||||||||||| |||||||| |
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| T |
9170366 |
tgcactttttgtcttgtttaaaacaagataaattttttgaagctattcaagttggatttgtgaacgatgataacaagaaagagattaaggaggttgctat |
9170267 |
T |
|
| Q |
216 |
tcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggc |
275 |
Q |
| |
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|||||| ||||||| || ||||||| ||| || ||||||||| | ||||| |||||||| |
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| T |
9170266 |
tcttgcttcaaggtgtttaagacttagaggggatgaaagaccttgtatgaaggaagtggc |
9170207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 9155731 - 9155478
Alignment:
| Q |
13 |
gagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttg |
112 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| || ||| | || || || || |||||| | ||||||||||| |||||||||| | || |||| |
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| T |
9155731 |
gagaaaagtgatgtctatagctttggagtagtgcttgcggagcttctgacaggagataaacctctatcttttaataggccagaagagagtattagtcttg |
9155632 |
T |
|
| Q |
113 |
caattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgc |
212 |
Q |
| |
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|||| ||||| || |||||||||| | | || | | ||||| | ||||||||||||| || |||||||| ||||||||||||||||| || ||||| |
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| T |
9155631 |
caatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtatcttaaatgatgaaaacaaggaggagattaaagaggttgc |
9155532 |
T |
|
| Q |
213 |
tattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaa |
266 |
Q |
| |
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|||||| |||||| |||| || ||||| ||| |||||||||||||| ||||| |
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|
| T |
9155531 |
tattctggcagcacggtgtttacgacttcgaggtgaggaaagacctagtatgaa |
9155478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 9200036 - 9199784
Alignment:
| Q |
13 |
gagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttg |
112 |
Q |
| |
|
||||||||||||||||||||||| || || || || |||||| | ||||| || || |||||| |||||||||| || | |||||| | || || |||| |
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| T |
9200036 |
gagaaaagtgatgtttatagctttggagtggttcttgcagagcttctaacaggtgacaaacctctttcttttaacaggcaagaagaaaccattagtcttg |
9199937 |
T |
|
| Q |
113 |
caattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgc |
212 |
Q |
| |
|
| || ||||| || |||||||||| | | || | | | ||| | | |||||||||| |||||| ||||||| |||||| | ||||||||||| ||||| |
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| T |
9199936 |
ctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttggatgatgaaaacaagaaagagattaaggaggttgc |
9199837 |
T |
|
| Q |
213 |
tattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatga |
265 |
Q |
| |
|
||||||||| |||||||| || ||||||| ||| || ||||||||||| |||| |
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| T |
9199836 |
tattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatga |
9199784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 9218549 - 9218300
Alignment:
| Q |
16 |
aaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttgcaa |
115 |
Q |
| |
|
||||||||||| |||||||| || ||||| || |||||| | ||||| || | |||||| |||||||||| || |||||||||| || || ||||| | |
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| T |
9218549 |
aaaagtgatgtgtatagctttggagtagttcttgcagagcttctaacaggtgccaaacctctttcttttaacaggccagaagagaccattagtcttgcta |
9218450 |
T |
|
| Q |
116 |
ttcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctat |
215 |
Q |
| |
|
| ||||| || |||||||||| | | || | | | ||| | | |||||||||| ||||| |||||||| |||||| | ||||||||||| ||| |||| |
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| T |
9218449 |
tgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttcaatgatgaaaacaagaaagagattaaggaggtttctat |
9218350 |
T |
|
| Q |
216 |
tcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatga |
265 |
Q |
| |
|
|||||| |||||||| || ||||||| ||| || ||||||||||| |||| |
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|
| T |
9218349 |
tcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatga |
9218300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 1843215 - 1843475
Alignment:
| Q |
16 |
aaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttgcaa |
115 |
Q |
| |
|
||||||||||| |||||||| || ||||| || | |||| | |||||||||||||||||| ||| |||| ||| || ||||||| ||||| ||||||| |
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| T |
1843215 |
aaaagtgatgtctatagctttggagtagttcttgtagagttgctaacgggggagaaacctttttgttttggtaggccggaagagagaagaagtcttgcaa |
1843314 |
T |
|
| Q |
116 |
ttcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctat |
215 |
Q |
| |
|
| | || ||||||| || | | | || |||||| ||||||| |||||| |||| | | |||||| || ||||| | ||||| ||||| || ||| | |
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|
| T |
1843315 |
tgaatttactatcttgattgaaaaaagataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaaggaggtggctgt |
1843414 |
T |
|
| Q |
216 |
tcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggct |
276 |
Q |
| |
|
|||||| || | ||| |||||||||| ||| || |||||||| |||||||| ||||||||| |
|
|
| T |
1843415 |
tcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggct |
1843475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 1815821 - 1815558
Alignment:
| Q |
13 |
gagaaaagtgatgtttatagcttcggggtagtgctggcagagatcctaacgggggagaaacctatttcttttaatagaccagaagagaacagaagccttg |
112 |
Q |
| |
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|||||||||||||| |||||||| || ||||| || | ||| | |||||||||||||||||| ||| |||| ||| || ||||||| ||||| |||| |
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| T |
1815821 |
gagaaaagtgatgtatatagctttggagtagttcttgtggagctgctaacgggggagaaacctttttgttttggtaggccggaagagagaagaagtcttg |
1815722 |
T |
|
| Q |
113 |
caattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgc |
212 |
Q |
| |
|
| | ||||| |||||||| || | | || || |||||| ||||||| |||||| |||| | | |||||| || ||||| | | ||| | ||| || || |
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| T |
1815721 |
ctacgcactttttatcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagtgatcatggaggtggc |
1815622 |
T |
|
| Q |
213 |
tattcttgcagcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggct |
276 |
Q |
| |
|
| ||||||| || | || |||||||||| ||| ||||||||||| |||||||| ||||||||| |
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|
| T |
1815621 |
tgttcttgcggcgaactgtttgagacttataggggaggaaagaccaagcatgaaggaagtggct |
1815558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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