View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8371_low_21 (Length: 239)

Name: NF8371_low_21
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8371_low_21
NF8371_low_21
[»] chr7 (3 HSPs)
chr7 (1-99)||(35881872-35881970)
chr7 (139-222)||(35881322-35881405)
chr7 (88-140)||(35881812-35881864)
[»] chr1 (1 HSPs)
chr1 (16-63)||(10212280-10212327)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 35881970 - 35881872
Alignment:
Q  1 caatgataaaagaaacaaaactgaggaacaacaactacctcaactttcactatgaaaatcaaccataagtgcacgtgtatatacacgtagagtgtggct 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35881970 caatgataaaagaaacaaaactgaggaacaacaactacctcaactttcactatgaaaatcaaccataagtgcacgtgtatatacacgtagagtgtggct 35881872  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 35881405 - 35881322
Alignment:
Q  139 ttgacaagtgttcggtgtatacttaacaggttgttgtttcaaaattatgcataaaaaatagaacatcaatcagattttgatagc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35881405 ttgacaagtgttcggtgtatacttaacaggttgttgtttcaaaattatgcatcaaaaatagaacatcaatcagattttgatagc 35881322  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 35881864 - 35881812
Alignment:
Q  88 tagagtgtggctgtgtttgagaatatatagatcatcactgaacgcataacctt 140  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  35881864 tagagtgtggctgtgtttgagaatatatagatcatcactgaatgcttaacctt 35881812  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 10212280 - 10212327
Alignment:
Q  16 caaaactgaggaacaacaactacctcaactttcactatgaaaatcaac 63  Q
    |||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  10212280 caaaactgaggaacaacagctacctcaacttccactatgaaaaccaac 10212327  T

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