View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8371_low_23 (Length: 228)

Name: NF8371_low_23
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8371_low_23
NF8371_low_23
[»] chr1 (4 HSPs)
chr1 (1-228)||(51825284-51825511)
chr1 (1-228)||(31527881-31528108)
chr1 (1-228)||(32591823-32592050)
chr1 (1-193)||(37031309-37031501)
[»] chr3 (6 HSPs)
chr3 (6-228)||(49208776-49208998)
chr3 (11-204)||(49213640-49213833)
chr3 (11-228)||(49188763-49188980)
chr3 (3-228)||(49203600-49203825)
chr3 (9-228)||(49192499-49192718)
chr3 (10-97)||(29622725-29622814)
[»] chr8 (1 HSPs)
chr8 (57-228)||(26757142-26757313)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 51825511 - 51825284
Alignment:
Q  1 tcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51825511 tcaaacttgcaaagaaatcatggattttccctggtcaatcttccactgtcttcgacctctcaccggtgaactacaccttcgaagttcaagccatgagtgc 51825412  T
Q  101 tgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctcaaatacgctaaactgatttcccctcat 200  Q
     |||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  51825411 cgaaaaactgcctttcgttcttcctgcggtcttcacaattggtcctcgtgttgacgatcacgaaagcctcctcaaatacgctaaactgatttcccctcat 51825312  T
Q  201 gataaactctcgaaccacgttaaggaac 228  Q
    |||||||||||||||||||| |||||||    
T  51825311 gataaactctcgaaccacgtcaaggaac 51825284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31528108 - 31527881
Alignment:
Q  1 tcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  31528108 tcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccggtgaactacaccttcgaagttcaagccatgagtgc 31528009  T
Q  101 tgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctcaaatacgctaaactgatttcccctcat 200  Q
     |||||||||||||||||||| || || |||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  31528008 cgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccctcat 31527909  T
Q  201 gataaactctcgaaccacgttaaggaac 228  Q
    |||||||||||||| |||||||||||||    
T  31527908 gataaactctcgaatcacgttaaggaac 31527881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32591823 - 32592050
Alignment:
Q  1 tcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32591823 tcaaacttgcaaagaaatcatgggttttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgc 32591922  T
Q  101 tgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctcaaatacgctaaactgatttcccctcat 200  Q
    ||||||||||||||||||||| || || |||||||||||||||| ||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  32591923 tgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgatgatcaggaaagcctcctcaaatacgctaaactgatttcccctcat 32592022  T
Q  201 gataaactctcgaaccacgttaaggaac 228  Q
    |||||||||||||| || || |||||||    
T  32592023 gataaactctcgaatcatgtcaaggaac 32592050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 37031501 - 37031309
Alignment:
Q  1 tcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgc 100  Q
    ||||||||||||||||| |||||||| | || |||||||| ||| | ||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||    
T  37031501 tcaaacttgcaaagaaagcatggattcttcccggtcaatcctgctctgtcttggacctctcaccggtaaactacaccttcgaagttcaagctatgagcgc 37031402  T
Q  101 tgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctcaaatacgctaaactgatttc 193  Q
     || ||||| ||||| |||||||| || |||||||| ||||||| ||| || || ||| | |||||||| ||||||||||| ||||| |||||    
T  37031401 ggagaaacttccttttgttctccccgctgtcttcactattggtcctcgtgtggatgataaggaaagccttctcaaatacgccaaacttatttc 37031309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 49208998 - 49208776
Alignment:
Q  6 cttgcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaa 105  Q
    |||| ||||||| |||||||||| || |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49208998 cttgaaaagaaagcatggatttttccaggtcaatcctgcactgtcttcgacctctcaccggtgaactacaccttcgaagttcaagccatgagtgctgaaa 49208899  T
Q  106 aactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctcaaatacgctaaactgatttcccctcatgataa 205  Q
    |||| |||||||| |||||||||||||||||||| |||| ||| ||||||||| | ||||||||||||||||| || ||||| |||||||||||||||||    
T  49208898 aactccctttcgtcctccctgccgtcttcacaatcggtcctcgtgttgacgattacgaaagcctcctcaaatatgccaaactaatttcccctcatgataa 49208799  T
Q  206 actctcgaaccacgttaaggaac 228  Q
    |||||| || |||||||| ||||    
T  49208798 actctccaatcacgttaatgaac 49208776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 49213833 - 49213640
Alignment:
Q  11 aaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactg 110  Q
    ||||||| ||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  49213833 aaagaaagcatggattttccccggtcaatcatgcacggtcttcgacctttcaccggtgaactataccttcgaagttcaagccatgagtgccgaaaaactc 49213734  T
Q  111 cctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctcaaatacgctaaactgatttcccctcatgata 204  Q
    ||||||||||||||||| |||||||| || |||| ||| ||||||||| | |||||||||||||||||||| ||||| ||||| || |||||||    
T  49213733 cctttcgttctccctgctgtcttcactatcggtcctcgtgttgacgatcaggaaagcctcctcaaatacgccaaacttatttcaccccatgata 49213640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 49188980 - 49188763
Alignment:
Q  11 aaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactg 110  Q
    ||||||| |||||||||| || |||||||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||| || |||||     
T  49188980 aaagaaagcatggatttttcccggtcaatcctgcactgtcttggacctctcaccggtaaactacacctttgaagttcaagctatgagtgccgagaaactt 49188881  T
Q  111 cctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctcaaatacgctaaactgatttcccctcatgataaactct 210  Q
    ||||| |||||||| ||||||||||||||||||| ||| ||||||||| | |||||||| ||||||||||| ||||| ||||| |||||||||  || ||    
T  49188880 ccttttgttctccccgccgtcttcacaattggtcctcgtgttgacgatcaggaaagccttctcaaatacgccaaacttatttcacctcatgatcgacact 49188781  T
Q  211 cgaaccacgttaaggaac 228  Q
    | || |||||||| ||||    
T  49188780 ccaatcacgttaatgaac 49188763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 49203825 - 49203600
Alignment:
Q  3 aaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctg 102  Q
    ||||||||||||||| |||||||| | || ||||| || ||| ||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |    
T  49203825 aaacttgcaaagaaagcatggattattcccggtcagtcctgctccgtcttggacctctcaccggtaaactacaccttcgaagttcaagctatgagtgccg 49203726  T
Q  103 aaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctcaaatacgctaaactgatttcccctcatga 202  Q
    | ||||| ||||| |||||||||||||| ||||| ||||||| ||| ||||||||| | |||||||| ||||||||||| ||||| ||||| || |||||    
T  49203725 agaaacttccttttgttctccctgccgttttcactattggtcctcgtgttgacgatcaggaaagccttctcaaatacgccaaacttatttcaccacatga 49203626  T
Q  203 taaactctcgaaccacgttaaggaac 228  Q
    |  |||||| || || ||||| ||||    
T  49203625 tcgactctccaatcatgttaatgaac 49203600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 49192718 - 49192499
Alignment:
Q  9 gcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaac 108  Q
    ||||||||| |||||||| | || |||||||| | | ||||||||||||||||||| || || || ||||| ||||||||||| ||||| || || ||||    
T  49192718 gcaaagaaagcatggattctacccggtcaatcctactccgtcttcgacctctcacctgtaaattacacctttgaagttcaagcaatgagcgcagagaaac 49192619  T
Q  109 tgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctcaaatacgctaaactgatttcccctcatgataaact 208  Q
    | ||||| |||||||| || |||||||| || |||| ||| || || ||| | |||||||| ||||||||||| ||||| ||||| || || ||||||||    
T  49192618 ttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttctcaaatacgccaaacttatttcaccgcacgataaact 49192519  T
Q  209 ctcgaaccacgttaaggaac 228  Q
    ||| || || ||||||||||    
T  49192518 ctccaatcatgttaaggaac 49192499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 29622725 - 29622814
Alignment:
Q  10 caaagaaatcatggatt-ttccctggtcaatcttgcaccgtcttcgacctct--caccggtgaactataccttcgaagttcaagccatgag 97  Q
    ||||||||||||| ||| ||||| || ||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||    
T  29622725 caaagaaatcatgaattcttcccagg-caatcctgcaccgtcttcgacctctctcaccggtgaactacaccttcgaagttcaagcaatgag 29622814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 26757313 - 26757142
Alignment:
Q  57 ctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacg 156  Q
    |||||||| || ||||| |||||| |||||||||| ||||||||||||||||| || ||||||||||| || || ||||| || |||| ||| || ||||    
T  26757313 ctctcaccagtaaactacaccttcaaagttcaagcaatgagtgctgaaaaactcccattcgttctccccgctgtgttcactataggtcctcgtgtggacg 26757214  T
Q  157 atgatgaaagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaac 228  Q
    || |||||||||| ||||||||||| ||||| ||||| |  ||||||| || ||| || |||||||| ||||    
T  26757213 atcatgaaagccttctcaaatacgccaaactaatttcacagcatgatagacactccaatcacgttaatgaac 26757142  T

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