View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8371_low_4 (Length: 510)
Name: NF8371_low_4
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 27974026 - 27973550
Alignment:
| Q |
18 |
tcaactataagaaacatggacaccgtacacgacattcataaaacactgtggaatgaaactgataaaattctatgaagcaccgacacaaacacaagacatg |
117 |
Q |
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| T |
27974026 |
tcaactataagaaacatggacactgtacacgacattcataaaacactatgcaatgaaactgataaaattctatgaagcaccgacacgaacacaagacatg |
27973927 |
T |
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| Q |
118 |
acgctgatactggcatgaagacattgataataatataagaaagtcgaagtgatttaatgtaattatatgtgtcgatgtcgaatactaacactttctatct |
217 |
Q |
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| T |
27973926 |
acgctgatattggcatgaagacattgataataatataagaaagtcgaagtggtttaatgtaattatatgtgtcgttgtcgaatactaacactttctatct |
27973827 |
T |
|
| Q |
218 |
agaaggaaatgaataattttcatgcatgtaaattgtttgccatctttgaatggatcaacaaattttcacatttttcagataatttagttgaggaaatgag |
317 |
Q |
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| T |
27973826 |
agaaggaaatgaataattttcatgcatgtaaattgtttgccatctttgaatggatcaacaaattttcacatttttcagataatttagttgaggaaatgag |
27973727 |
T |
|
| Q |
318 |
aatgttggtcattcttaaatcaccaaatggccagcaaaatatacatgttttgatgaaaataatgatgttggaaaaaataatccagattcataatatgagg |
417 |
Q |
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| T |
27973726 |
aatgttggtcattcttaaatcaccaaatggccagcaaaatatacatgttttgatggaaataatgatgttggaaaaaataatccagattcataatatgagg |
27973627 |
T |
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| Q |
418 |
aacaattatataacatatatactatgaaacataccttggagacattgatccaaccattttgattgctttgtcctaat |
494 |
Q |
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| T |
27973626 |
aacaattatataacatatatactatgaaacataccttggagacattgatccaaccattttgattgctttgtcctaat |
27973550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 28735864 - 28735820
Alignment:
| Q |
145 |
taataatataagaaagtcgaagtgatttaatgtaattatatgtgt |
189 |
Q |
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| T |
28735864 |
taataatttaagaaaatagaagtgattgaatgtaattatatgtgt |
28735820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 491
Target Start/End: Original strand, 46044960 - 46045007
Alignment:
| Q |
444 |
aaacataccttggagacattgatccaaccattttgattgctttgtcct |
491 |
Q |
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| T |
46044960 |
aaacataccttggagactttgttccagccattttgattgttttgtcct |
46045007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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