View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8371_low_5 (Length: 458)
Name: NF8371_low_5
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 11604373 - 11603953
Alignment:
| Q |
19 |
attaagtttaaatgagttaccttcttatcttaaatcatgtttgatgtatttaaccatctttccggaatttcacgctatggagacttggagattgattcgg |
118 |
Q |
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| T |
11604373 |
attaagtttaaatgagttaccttcttatcttaaatcatgtttgatgtatttaaccatctttccggaatttcacgctatggagacttggagattgattcgg |
11604274 |
T |
|
| Q |
119 |
ttgtggatagctgaagggtttgtaaatggtgaagatggtaagacacttgaggaagttgcagacagttatcttaaggagcttttggacagaagtttaatcc |
218 |
Q |
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| T |
11604273 |
ttgtggatagctgaagggtttgtaaatggtgaagatggtaagacacttgaggaagttgcagacagttatcttaaggagcttttggacagaagtttaatcc |
11604174 |
T |
|
| Q |
219 |
aagttgtggaaaaaaccagtgatggaaggatgaagacgtgtcgaatgcatggtcttctaagggaaattgttaattctaagtcaagagatcagaactttgc |
318 |
Q |
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| T |
11604173 |
aagttgtggaaaaaaccagtgatggaaggatgaagacgtgtcgaatgcacggtcttctaagggaaattgttaattctaagtcaagagatcagaactttgc |
11604074 |
T |
|
| Q |
319 |
aacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatgtattacaacaaaatacgactaca |
418 |
Q |
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| T |
11604073 |
aacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatgtattacaacaaaatacgactaca |
11603974 |
T |
|
| Q |
419 |
tttcatcttaggtctctgcta |
439 |
Q |
| |
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| T |
11603973 |
tttcatcttaggtctctgcta |
11603953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 11641583 - 11642002
Alignment:
| Q |
20 |
ttaagtttaaatgagttaccttcttatcttaaatcatgtttgatgtatttaaccatctttccggaatttcacgctatggagacttggagattgattcggt |
119 |
Q |
| |
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|||||||| ||||| || |||| ||||||||||||| ||| ||||||||| | ||||||| |||||||||||||| ||| | |||||||||||| | |
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| T |
11641583 |
ttaagtttcaatgaattgccttaccatcttaaatcatgcttgttgtatttaagcgtctttccagaatttcacgctatcgagcatatgagattgattcgat |
11641682 |
T |
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| Q |
120 |
tgtggatagctgaagggtttgtaaatggtgaagatggtaagacacttgaggaagttgcagacagttatcttaaggagcttttggacagaagtttaatcca |
219 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||| |||| |
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| T |
11641683 |
tgtgggtagctgaaggatttgtaaatggtgaagatggtaagacactagaggaagttgcagatcgttaccttaaggagcttttgaacagaagtttgctcca |
11641782 |
T |
|
| Q |
220 |
agttgtggaaaaaaccagtgatggaaggatgaagacgtgtcgaatgcatggtcttctaagggaaattgttaattctaagtcaagagatcagaactttgca |
319 |
Q |
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| T |
11641783 |
agtggtagaaaaaaccagtgatggaaggatgaagacttgtcgtatgcatgaccttctaagagaaattgttaatttcaagtcaagggatcagaactttgca |
11641882 |
T |
|
| Q |
320 |
acaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatgtattacaacaaaatacgactacat |
419 |
Q |
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||| ||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||| | || ||||||||| | |||| |||| ||| | || |
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| T |
11641883 |
acagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcacataatgtacttaaacagaataagaccatat |
11641982 |
T |
|
| Q |
420 |
ttcatcttaggtctctgcta |
439 |
Q |
| |
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| | ||||||||||||||| |
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| T |
11641983 |
tcaaacttaggtctctgcta |
11642002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 11623077 - 11623454
Alignment:
| Q |
20 |
ttaagtttaaatgagttaccttcttatcttaaatcatgtttgatgtatttaaccatctttccggaatttcacgctatggagacttggagattgattcggt |
119 |
Q |
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|||||||| ||||| || |||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||| ||| | |||||||||||| | |
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| T |
11623077 |
ttaagtttcaatgaattgccttaccatcttaaatcatgtttgttgtatttaagcatctttccggagtttcacgctatcgagcatatgagattgattcgat |
11623176 |
T |
|
| Q |
120 |
tgtggatagctgaagggtttgtaaatggtgaagatggtaagacacttgaggaagttgcagacagttatcttaaggagcttttggacagaagtttaatcca |
219 |
Q |
| |
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||| |||||||||||| ||||||||| ||||| |||| |||||||| |||||||||||||| |||| ||||||||||||||| |||||||||| |||| |
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| T |
11623177 |
tgttgatagctgaaggatttgtaaatagtgaaaatggcaagacactagaggaagttgcagatcgttaccttaaggagcttttgaacagaagtttgctcca |
11623276 |
T |
|
| Q |
220 |
agttgtggaaaaaaccagtgatggaaggatgaagacgtgtcgaatgcatggtcttctaagggaaattgttaattctaagtcaagagatcagaactttgca |
319 |
Q |
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||| || ||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||||| |
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| T |
11623277 |
agtggtagaaaaaaccagtgatggaaggataaagacttgtcgaatgcatgaccttctaagagaaattgttaatttcaagtcaagggatcagaactttgca |
11623376 |
T |
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| Q |
320 |
acaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatgta |
397 |
Q |
| |
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||| ||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||||| | || ||||||||| |
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| T |
11623377 |
acagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcagtcataaattcgtcacataatgta |
11623454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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