View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8371_low_6 (Length: 447)
Name: NF8371_low_6
Description: NF8371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8371_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 433
Target Start/End: Complemental strand, 27443750 - 27443329
Alignment:
| Q |
12 |
ttctttctagcctcagcaatttctcgcagaattgaattctccatcactgcaggcgaaccaaaacttagtttgtatcctcctagtggtgaccatgcactca |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27443750 |
ttctttctagcctcagcaatttctcgcagaattgaattctccatcactgcaggcgaaccaaaacttagtttgtatcctcctagtggtgaccatgcactca |
27443651 |
T |
|
| Q |
112 |
catgaattactttctacttgcagaattctctgagtttcccctgatgccatgatgagttcatttccacctaaatccaactaacaagtgtatgagtatcgga |
211 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27443650 |
catgaattcctttctgcttgcagaattctctgagtttcccctgatgccatgatgagttcatttccacctaaatccaactaacaagtgaatgagtatcgga |
27443551 |
T |
|
| Q |
212 |
tacgtgtatgatgcatttccattttgaaataacagacgcaaccaataagtgcatttgatctctatgtcaaaatgcctcaaatcaactagcactaaattct |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |
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| T |
27443550 |
tacgtgtatgatgcatttccattttgaaataacagacgcaaccaataagtgcatttgatctctacgtcataattcctcaaatcaactagcactaaattct |
27443451 |
T |
|
| Q |
312 |
cttaagtcatacctgattaactgcaggatagattttggcactttcgaagagcatggagagatttttgataccaaagttgctaacaccaatagactttgct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27443450 |
cttaagtcatacctgattaactgcaggatagattttggcactttcgaagagcatggagagctttttgataccaaagttgctaacaccaatagactttgct |
27443351 |
T |
|
| Q |
412 |
aagcccaatctataacaatatt |
433 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
27443350 |
aagcccaatctataacaatatt |
27443329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 27440932 - 27440756
Alignment:
| Q |
12 |
ttctttctagcctcagcaatttctcgcagaattgaattctccatcactgcaggcgaaccaaaacttagtttgtatcctcctagtggtgaccatgcactca |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
27440932 |
ttctttctagcctcagcaattttgcgcagaatcaaattctccatcactgcaggcgaaccccaacttagtttgtagcctcctagtggtgaccatgcactca |
27440833 |
T |
|
| Q |
112 |
catgaattactttctacttgcagaattctctgagtttcccctgatgccatgatgagttcatttccacctaaatccaa |
188 |
Q |
| |
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|||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27440832 |
catggattcctttctgcttgcagaattctctaagtttcccctgatgccatgatgagttcatttccacctaaatccaa |
27440756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 27429483 - 27429307
Alignment:
| Q |
12 |
ttctttctagcctcagcaatttctcgcagaattgaattctccatcactgcaggcgaaccaaaacttagtttgtatcctcctagtggtgaccatgcactca |
111 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27429483 |
ttctttctagcctctgcaatttcgtgcagaattggattctccatcactgtaggcgaaccccaacttagtttgtatcctcctagtggtgaccatgcactca |
27429384 |
T |
|
| Q |
112 |
catgaattactttctacttgcagaattctctgagtttcccctgatgccatgatgagttcatttccacctaaatccaa |
188 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||| |
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|
| T |
27429383 |
catggattcctttctgcttgcagaattctcttagtttcccctgttgccatgatgggttcatctccacctaaatccaa |
27429307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 211 - 428
Target Start/End: Complemental strand, 27429092 - 27428881
Alignment:
| Q |
211 |
atacgtgtatgatgcatttccattttgaaataacagacgcaaccaat-aagtgcatttgatctctatgtcaaaatgcctcaaatcaactagcactaaatt |
309 |
Q |
| |
|
|||| ||| |||||| |||| |||||||| | || | ||||||||| ||||| ||||||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
27429092 |
atacatgtctgatgcttttcgattttgaagtgacttaggcaaccaattaagtgtatttgatctatatgtcaaaatgaatcaaatcaactagtgctaaatt |
27428993 |
T |
|
| Q |
310 |
ctcttaagtcatacctgattaactgcaggatagattttggcactttcgaagagcatggagagatttttgataccaaagttgctaacaccaatagactttg |
409 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||| |||| |||| ||||| |||||||| ||||||| ||||||||| || |||||||||||||||| |
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|
| T |
27428992 |
ctttta-------cctgattaactgcaggagcgatttcggcattttctaagagtatggagagctttttgacaccaaagttactgacaccaatagactttg |
27428900 |
T |
|
| Q |
410 |
ctaagcccaatctataaca |
428 |
Q |
| |
|
||| ||||||||||||||| |
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|
| T |
27428899 |
ctaggcccaatctataaca |
27428881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 320 - 430
Target Start/End: Complemental strand, 27440521 - 27440411
Alignment:
| Q |
320 |
atacctgattaactgcaggatagattttggcactttcgaagagcatggagagatttttgataccaaagttgctaacaccaatagactttgctaagcccaa |
419 |
Q |
| |
|
||||||| |||||||||||| |||| |||| |||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
27440521 |
atacctggttaactgcaggagcaatttcggcattttctaagagcatggagagctttttgataccaaagttgctgacaccaatagactttgctatgcccaa |
27440422 |
T |
|
| Q |
420 |
tctataacaat |
430 |
Q |
| |
|
||||||||||| |
|
|
| T |
27440421 |
tctataacaat |
27440411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 26911109 - 26911217
Alignment:
| Q |
80 |
tttgtatcctcctagtggtgaccatgcactcacatgaattactttctacttgcagaattctctgagtttcccctgatgccatgatgagttcatttccacc |
179 |
Q |
| |
|
||||||| |||| | |||||||||||||| |||||||||| |||||| | |||||||||| |||||||| | |||||||| |||| |||||||| ||| |
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|
| T |
26911109 |
tttgtatgctcccaatggtgaccatgcacacacatgaattcctttcttcatgcagaattccctgagtttttcttgatgccaagatggattcatttctacc |
26911208 |
T |
|
| Q |
180 |
taaatccaa |
188 |
Q |
| |
|
||||||||| |
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|
| T |
26911209 |
taaatccaa |
26911217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 423
Target Start/End: Original strand, 26933160 - 26933215
Alignment:
| Q |
368 |
agagatttttgataccaaagttgctaacaccaatagactttgctaagcccaatcta |
423 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
26933160 |
agagctttttgatgccaaagttgctaacaccaatagacttggctaagcctaatcta |
26933215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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