View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8372_high_1 (Length: 636)
Name: NF8372_high_1
Description: NF8372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8372_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 11 - 617
Target Start/End: Complemental strand, 39029010 - 39028397
Alignment:
| Q |
11 |
gagtttggtggtagttggataagcagttctagtaaaccaagaaatgaattaagatcacaagaaccaaccaatgatgaaagtgtgtgtctaagtgtgggac |
110 |
Q |
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| T |
39029010 |
gagtttggtggtagttggataagcaattctagtaaaccaagaaatgaattgagatcacaagaaccaaccaatgatgaaagtgtgtgtctaagtgtgggac |
39028911 |
T |
|
| Q |
111 |
aatgctggaagggaacacaaaaatcatatgttaaaatgggaagaaaaggttctgttcatcaaggtgaaatagaagaatctggaggagaatcaagcaatcc |
210 |
Q |
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| T |
39028910 |
aatgctggaagggaacacaaaaatcctatgttaaaatgggaagaaaaggttctgttcatcaaggtgaaatagaagaatctggaggagaatcaagcaatcc |
39028811 |
T |
|
| Q |
211 |
tgaaccattaagtggaaagaagtttttggttgttgatgatagtcctatgctgagaaagatttgtatggctactttgagatctcttggtgtgactactgtt |
310 |
Q |
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| T |
39028810 |
tgaaccattaagtggaaagaagtttttggttgttgatgatagtcctatgctgagaaagatttgtatggctactttgagatctcttggtgtgactactatt |
39028711 |
T |
|
| Q |
311 |
gaccaatgtgagaatggtgaagaggctgtgagaactgttcaagagggtttaacaaaggattttactaatcctccttatgattatatcttaatggattgtc |
410 |
Q |
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| T |
39028710 |
gaccaatgtgagaatggtgaagaggctgtgagaactgttcaagagggtttaaccaaggattttactaatcctccttatgattatatcttaatggattgtc |
39028611 |
T |
|
| Q |
411 |
aggtaattaatgattatacaatatggtttccacttct-------cattttactaatcctccttatgataatttatttttcattgtaatataactttagct |
503 |
Q |
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| T |
39028610 |
aggtaattaatgattatacaatatggtttccacttctcattagtcattttactaatcctccttatgataatttatttttcattgtaatataactttagct |
39028511 |
T |
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| Q |
504 |
ttattttttggtcaatgtgcttaacttaatccacaatgaattggacagatgccagtgaaggatgggtttgaggcaacaagggagataagagagatggaga |
603 |
Q |
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| T |
39028510 |
ttattttttggtcaatgtgcttaacttaatccacaatgaattggacagatgccagtgaaggatgggtttgaggcaacaagggagataagagagatggaga |
39028411 |
T |
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| Q |
604 |
aacagtatggtctt |
617 |
Q |
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| T |
39028410 |
aacagtatggtctt |
39028397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 604
Target Start/End: Complemental strand, 40895593 - 40895537
Alignment:
| Q |
548 |
acagatgccagtgaaggatgggtttgaggcaacaagggagataagagagatggagaa |
604 |
Q |
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| T |
40895593 |
acagatgccggtgatggatggatttgaggcaacaaggcggatacgagagatggagaa |
40895537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 40895761 - 40895721
Alignment:
| Q |
375 |
ctaatcctccttatgattatatcttaatggattgtcaggta |
415 |
Q |
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| T |
40895761 |
ctaatcctccttatgattacatcttaatggattgccaggta |
40895721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 6996067 - 6996027
Alignment:
| Q |
375 |
ctaatcctccttatgattatatcttaatggattgtcaggta |
415 |
Q |
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| T |
6996067 |
ctaatcctccttatgattacatcttaatggattgccaggta |
6996027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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