View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8372_high_2 (Length: 481)
Name: NF8372_high_2
Description: NF8372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8372_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 35042851 - 35042413
Alignment:
| Q |
18 |
ccctcttgtctccattctttcttcccttattgttggcataaaaattctaatgcattttgttaaaaat-taagagaaaagtatctcattgacttacggggt |
116 |
Q |
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| T |
35042851 |
ccctcttgtctccattctttcttcccttattgttggcataaaaattataatgcattttgttaaaaaaataagagataactatctcattgacttacagg-t |
35042753 |
T |
|
| Q |
117 |
tgacctggtagta---taagcttgagacaaacaaatgtgcttctttttaggtctttaagtttgaattctttttgtgctaacaattcattcgttggatcaa |
213 |
Q |
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|||||| |||||| ||||||||||||| || | ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
35042752 |
tgacctagtagtagtgtaagcttgagacacacgagtgtacttctttttagatctt-aagtttgaattctttttgtgctaacaattcatttgttagatcaa |
35042654 |
T |
|
| Q |
214 |
tcgatgcaaaattttaacctgacttcaactaannnnnnntcttgtgggaagcatgattggttctttggattagtcggttccaagatcatataccgagttt |
313 |
Q |
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| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||| |||||||||||| ||||| |
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| T |
35042653 |
ttgatgtaaaattttaacctgacttcaactaaccccccctcttgtgggaagcatgattggttccttagcttagtcggttcttagatcatataccaagttt |
35042554 |
T |
|
| Q |
314 |
ttaaaacaggataaatatatcaatataaaatcaagtgcaataattatgaatggccacatttgcttagttatgaacaatt-----gatttgactcatagca |
408 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
35042553 |
ctaaaacatgataaatatatcaatataaaagcaagtgcaataattatgaatggccacatttgcttagttatgaacaattatattgacttgactcatagca |
35042454 |
T |
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| Q |
409 |
aacttcatgtgtgaattgtgattggttcaatgtttcccact |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042453 |
aacttcatgtgtgaattgtgattggttcaatgtttcccact |
35042413 |
T |
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