View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8372_high_3 (Length: 439)

Name: NF8372_high_3
Description: NF8372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8372_high_3
NF8372_high_3
[»] chr4 (6 HSPs)
chr4 (1-419)||(33994658-33995077)
chr4 (1-125)||(33988963-33989087)
chr4 (131-241)||(32798820-32798930)
chr4 (1-109)||(34007511-34007619)
chr4 (1-123)||(34003083-34003208)
chr4 (1-103)||(33999738-33999840)


Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 33995077 - 33994658
Alignment:
Q  1 aacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttgctattatgccaatgattcgtccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33995077 aacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttgctattatgccaatgattcgtccct 33994978  T
Q  101 tctggtcatggccttgagaaaatatatgtgacaggatcaatatcaaagacgcgagtagaactgctatccacccactcctttttctcctcaagtgtcaaag 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33994977 tctggtcatggccttgagaaagtatatgtgacaggatcaatatcaaagacgcgagtaggactgctatccacccactcctttttctcctcaagtgtcaaag 33994878  T
Q  201 actccatcaaatccttgttgatgtgaatgtctggttcgtacttaaatatgaatgcaccataaaatattgaagagcattttgctccaataaattataccat 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33994877 actccatcaaatccttgatgatgtgaatgtctggttcgtacttaaatatgaatgcaccataaaatattgaagagcattttgctccaataaattatactat 33994778  T
Q  301 agagccacaaattggtaaaattcagctcatgtaaaaactttacctaaactggagtagtaaataaaatgatattaaaatgggcaatgtatattat-gctaa 399  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  33994777 agagccacaaattggtaaaattcagctcatttaaaagctttaccaaaactggagtagtaaataaaatgatattaaaatgggcaatgtatattatacctaa 33994678  T
Q  400 ttctgagttttgactgcctt 419  Q
    ||||||||||||||||||||    
T  33994677 ttctgagttttgactgcctt 33994658  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 33989087 - 33988963
Alignment:
Q  1 aacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttgctattatgccaatgattcgtccct 100  Q
    ||||| |||||||| ||||||||| ||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33989087 aacaagtggaagccctattactttgcatgtggtgagaaaaataggttgcattgcaatgttggacaaatgaagtttgctattatgccaatgattcgtccct 33988988  T
Q  101 tctggtcatggccttgagaaaatat 125  Q
    ||| |||||||||||||||| ||||    
T  33988987 tctagtcatggccttgagaatatat 33988963  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 32798820 - 32798930
Alignment:
Q  131 acaggatcaatatcaaagacgcgagtagaactgctatccacccactcctttttctcctcaagtgtcaaagactccatcaaatccttgttgatgtgaatgt 230  Q
    |||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  32798820 acaggatcaatatcaaagacacgagttggactactatccacccactcctttttctcctcaagtgtcaaagactccatcaaatcctcattgatgtgaatgt 32798919  T
Q  231 ctggttcgtac 241  Q
    |||||||||||    
T  32798920 ctggttcgtac 32798930  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 34007619 - 34007511
Alignment:
Q  1 aacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttgctattatgccaatgattcgtccct 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||||| |    
T  34007619 aacaagtggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgtcggacaaatgaagttcgctgttatgccaatgcttcgtcctt 34007520  T
Q  101 tctggtcat 109  Q
    |||||||||    
T  34007519 tctggtcat 34007511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 34003208 - 34003083
Alignment:
Q  1 aacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttgctattatgccaatgattcgtccct 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||||| |    
T  34003208 aacaagtggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttacggttatgccaatgcttcgtcctt 34003109  T
Q  101 tctgg---tcatggccttgagaaaat 123  Q
    |||||   |||||||||||| |||||    
T  34003108 tctggcaatcatggccttgaaaaaat 34003083  T

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Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 33999840 - 33999738
Alignment:
Q  1 aacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttgctattatgccaatgattcgtccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||||| |    
T  33999840 aacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttacggttatgccaatgcttcgtcctt 33999741  T
Q  101 tct 103  Q
    |||    
T  33999740 tct 33999738  T

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