View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8372_low_12 (Length: 217)
Name: NF8372_low_12
Description: NF8372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8372_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 53538732 - 53538915
Alignment:
| Q |
15 |
agagagaagactaatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaaaa |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53538732 |
agagaaaagactaatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggc-tgaaaagaaaa |
53538830 |
T |
|
| Q |
115 |
aggaaagggatacagagattacaaaatttaataaactaaggatataatatcnnnnnnnttgaggtgtgagagtagcattaagatag |
200 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
53538831 |
aggaaaggggtacagggattacaaaatttaacaaactaaggatataatatc-aaaaaattgaggtgtgagaatagcattaagatag |
53538915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 7120075 - 7120174
Alignment:
| Q |
27 |
aatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaaaaaggaaagggata |
126 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7120075 |
aatgagtgagaggaaatgttaatgagagaccatgtatagaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaataaggaaagggata |
7120174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University