View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8372_low_14 (Length: 201)
Name: NF8372_low_14
Description: NF8372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8372_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 24314157 - 24313982
Alignment:
| Q |
15 |
aacaacaacatccaaacagatacattaactgtcacttttggtaatatgaacattaaaaaccaaatctttcttgtttatcagttcaaagacacaaacttat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24314157 |
aacaacaacatccaaacagatacattaactgtcacttttggtaatatgaacattaaaaaccaaatccttcttgtttatcagttcaaagacacaaacttat |
24314058 |
T |
|
| Q |
115 |
caaatctcaagtgattcattatcactatgaccaacatttcctttatcatcacaagggtcacatgaagaataatcta |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24314057 |
caaatctcaagtgattcattatcactatgaccaacatttcctttatcatcacaaggctcacatgaagaataatcta |
24313982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 24347055 - 24346960
Alignment:
| Q |
15 |
aacaacaacatccaaacagatacattaactgtcacttttggtaatatgaacattaaaaaccaaatctttcttgtttatcagttcaaagacacaaac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24347055 |
aacaacaacatccaaacagatacattaactgtcacttttggtaatatgaatattaaaaaccaaatccttcttgtttatcagttcaaagacacaaac |
24346960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 24364002 - 24364069
Alignment:
| Q |
43 |
ctgtcacttttggtaatatgaacattaaaaaccaaatctttcttgtttatcagttcaaagacacaaac |
110 |
Q |
| |
|
|||||||||| | || |||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24364002 |
ctgtcactttagtaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaac |
24364069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 24370517 - 24370474
Alignment:
| Q |
67 |
ttaaaaaccaaatctttcttgtttatcagttcaaagacacaaac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24370517 |
ttaaaaaccaaatctttcttgtttatcaattcaaagacacaaac |
24370474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 24352712 - 24352662
Alignment:
| Q |
60 |
atgaacattaaaaaccaaatctttcttgtttatcagttcaaagacacaaac |
110 |
Q |
| |
|
|||||| |||||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
24352712 |
atgaactttaaaaactaaattttccttgtttatcagttcaaagacacaaac |
24352662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 24359449 - 24359396
Alignment:
| Q |
57 |
aatatgaacattaaaaaccaaatctttcttgtttatcagttcaaagacacaaac |
110 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||| || |||||||||||||| |
|
|
| T |
24359449 |
aatatgaactttaaaaactaaatcttccttgtttatgagctcaaagacacaaac |
24359396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 24351809 - 24351741
Alignment:
| Q |
116 |
aaatctcaagtgattcattatcactatgaccaacatttcctttatcatcacaagggtcacatgaagaat |
184 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||| || |||||| || |||||||||||||| |
|
|
| T |
24351809 |
aaatctcaagtgattcatcgtcattttgaccaacatttccattttcatcatcagtgtcacatgaagaat |
24351741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 24362988 - 24362912
Alignment:
| Q |
34 |
atacattaactgtcacttttggtaatatgaacattaaaaaccaaatctttcttgtttatcagttcaaagacacaaac |
110 |
Q |
| |
|
|||||||||||||| |||| || ||||| |||||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
24362988 |
atacattaactgtccctttataaaacatgaattttaaaaactaaatcttgcttgtttgtcagttcaaagacacaaac |
24362912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 24356117 - 24356067
Alignment:
| Q |
60 |
atgaacattaaaaaccaaatctttcttgtttatcagttcaaagacacaaac |
110 |
Q |
| |
|
|||||| |||||||| ||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
24356117 |
atgaactttaaaaactaaaccttccttgtttatcagttcgaagacacaaac |
24356067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 24344622 - 24344557
Alignment:
| Q |
116 |
aaatctcaagtgattcattatcactatgaccaacatttcctttatcatcacaagggtcacatgaag |
181 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||| | || |||||| || ||||||||||| |
|
|
| T |
24344622 |
aaatctcaactgattcatcatcactatgaccaacattgtcattttcatcatcagtgtcacatgaag |
24344557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University