View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8372_low_6 (Length: 287)
Name: NF8372_low_6
Description: NF8372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8372_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 18476687 - 18476503
Alignment:
| Q |
19 |
ttgtttatcgattacacgttagtcattttgaaatgttcaaattttaatcaatnnnnnnnnngggaaaagattggagagattttgcacatagaagtaagaa |
118 |
Q |
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| T |
18476687 |
ttgtttatcgactacacgttagtcattttgaaatgttcaaattttaatcaataaaaaaagagggaaaagattggagagattttgcacatagaagtaagaa |
18476588 |
T |
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| Q |
119 |
gnnnnnnngattggaaacgaatagccaatttcgataaaatatccatggattttcactcttcattgttgagaaatgctggtgatta |
203 |
Q |
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| T |
18476587 |
gaaaaaaagattggaaacgaatagcgaattttgataaaatatccatgaattttcactcttcattgttgagaaatgctggtgatta |
18476503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 18471440 - 18471264
Alignment:
| Q |
17 |
ttttgtttatcgattacacgttagtcattttgaaatgttcaaattttaatcaatnnnnnnnnn-gggaaaagattggagagattttgcacatagaagtaa |
115 |
Q |
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| T |
18471440 |
ttttctttatcgattacacgttactcattttgaaatgttcaaattttaatcaataaaaaaaagagggaaaagattggtgagattttgcacatagaagtaa |
18471341 |
T |
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| Q |
116 |
gaagnnnnnnngattggaaacgaatagccaatttcgat-aaaatatccatggattttcactcttcattgttgagaaa |
191 |
Q |
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| T |
18471340 |
gaagaaaaaaagattggaaaccaatagccaatttcgataaaaatatccatggattttcactctttattgttgagaaa |
18471264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 18476486 - 18476451
Alignment:
| Q |
222 |
ttagttgggattgaatattggacctcctataagata |
257 |
Q |
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| T |
18476486 |
ttagttgggattgaatattggacctcctataagata |
18476451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 18471254 - 18471218
Alignment:
| Q |
221 |
cttagttgggattgaatattggacctcctataagata |
257 |
Q |
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| T |
18471254 |
cttagttgggattgaatattggacctcgtataagata |
18471218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 15460211 - 15460257
Alignment:
| Q |
127 |
gattggaaacgaatagccaatttcgataaaatatccatggattttca |
173 |
Q |
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| T |
15460211 |
gattggaaacgaatagccaatttcgatacactatctatcgattttca |
15460257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 15460109 - 15460146
Alignment:
| Q |
23 |
ttatcgattacacgttagtcattttgaaatgttcaaat |
60 |
Q |
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| T |
15460109 |
ttatcgattacaagttagtcattttgaaattttcaaat |
15460146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 15589861 - 15589909
Alignment:
| Q |
130 |
tggaaacgaatagccaatttcgataaaatatccatggattttcactctt |
178 |
Q |
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| T |
15589861 |
tggaaacaaatagccaatttcgatacagtatccttggaatttcactctt |
15589909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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