View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8372_low_7 (Length: 246)
Name: NF8372_low_7
Description: NF8372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8372_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3420908 - 3420674
Alignment:
| Q |
1 |
acaaaatggctactaagctctgtgattcttgcaagtcaacaaaggcaacactattctgccgttctgattcagctttcctctgtctaacttgtgattccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
3420908 |
acaaaatggctactaagctctgtgattcttgcaagtcaacaaaggcaacactattctgccgttctgattcagctttcctctgtctaacctgtgattcaaa |
3420809 |
T |
|
| Q |
101 |
catccatgccgccaacaaactcgcctcccgccaccaccgtgtcacactctgccaagtttgtgaacaagctccggctcacgtcacctgcaaagccgacgca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3420808 |
catccatgccgccaacaaactcgcctcccgccaccaccgtgtcacactctgccaagtttgtgaacaagctccggctcacgtcacctgcaaagccgacgca |
3420709 |
T |
|
| Q |
201 |
gctgttctatgtatctcctgtgatcatgatgtcca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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| T |
3420708 |
gctgttctatgtatctcctgtgatcatgatatcca |
3420674 |
T |
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